That's strange. The directory does exist. If I check pwd that's what I get. barlab_002 refers to a volume. So I changed the path to /space/barlab/2/users/cibu/dep_LGI and now it doesn't seem to have problems with the fsaverage
Thanks Doug
- Cibu
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Thursday, September 18, 2008 11:22 AM To: Cibu Thomas Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_preproc
/space/barlab_002/users/cibu/dep_LGI does not exist
Cibu Thomas wrote:
Hello When I run the mri_preproc command I am getting the message ERROR: cannot find fsaverage in /space/barlab_002/users/cibu/dep_LGI But the fsaverage folder is in the path and subjects_dir is set correctly. So I am not sure what's wrong with the command Here's the command I am trying to run
mris_preproc --fsgd lgi_N32_Dep_Ctrl_Age_BDI.fsgd --target fsaverage -- hemi lh --meas lgi --out N32_lgi_dep_ctrl_Age_BDI_lh.mgh
Any help would be greatly appreciated
Thankyou Cibu Thomas
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer