Hi Pratap See below for bugr info and I have attached the log file. I assumed you were asking for surfer.log. Let me know if it some other log file.

Thank you Cibu ---------------------------------------------------------------------

FREESURFER_HOME: /usr/local/freesurfer/stable4

Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.0.5-20080918

RedHat release: CentOS release 4.2 (Final)

Kernel info: Linux 2.6.9-22.0.2.106.unsupported x86_64

NMR Center info (/space/freesurfer exists):

machine: snapjudge

SUBJECTS_DIR: /space/barlab/5/users/mark/subjects_depMOCS_V4/

PWD: /autofs/space/barlab_002/users/cibu/dep_LGI

--------------------------------------------------------------------- Please include the following additional information in your report:

1) subject name 2) the entire command-line executed 3) the error message generated 4) optionally include the subject's /script/recon-all.log

See also: http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

On Thu, 2008-09-18 at 10:46 -0400, Pratap Kunwar wrote:

Hi Cibu,

can you provide more informations using bugr command? also log file?

...

Hello When I run the mri_preproc command I am getting the message ERROR: cannot find fsaverage in /space/barlab_002/users/cibu/dep_LGI But the fsaverage folder is in the path and subjects_dir is set correctly. So I am not sure what's wrong with the command Here's the command I am trying to run

mris_preproc --fsgd lgi_N32_Dep_Ctrl_Age_BDI.fsgd --target fsaverage -- hemi lh --meas lgi --out N32_lgi_dep_ctrl_Age_BDI_lh.mgh

Any help would be greatly appreciated

Thankyou Cibu Thomas

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That's strange. The directory does exist. If I check pwd that's what I get. barlab_002 refers to a volume. So I changed the path to /space/barlab/2/users/cibu/dep_LGI and now it doesn't seem to have problems with the fsaverage

Thanks Doug

- Cibu

-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Thursday, September 18, 2008 11:22 AM To: Cibu Thomas Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_preproc

/space/barlab_002/users/cibu/dep_LGI does not exist

Cibu Thomas wrote:

Hello When I run the mri_preproc command I am getting the message ERROR: cannot find fsaverage in /space/barlab_002/users/cibu/dep_LGI But the fsaverage folder is in the path and subjects_dir is set correctly. So I am not sure what's wrong with the command Here's the command I am trying to run

mris_preproc --fsgd lgi_N32_Dep_Ctrl_Age_BDI.fsgd --target fsaverage -- hemi lh --meas lgi --out N32_lgi_dep_ctrl_Age_BDI_lh.mgh

Any help would be greatly appreciated

Thankyou Cibu Thomas

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