Can you send us the recon-all.log file from the scripts dir?
On Apr 17, 2022, at 9:35 PM, HYE JUNG YOUN hyejung7890@amc.seoul.kr wrote:
External Email - Use Caution Hi Bruce,
Here’s what it looks like : [image003.png] [image004.png]
I got enough disk space.
Thanks!
H
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Fischl, Bruce Sent: Monday, April 18, 2022 10:08 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Failed to load MRI error
What is inside your mri folder? And make sure you are not running out of disk space as that would cause the 0 length files Cheers Bruce
On Apr 17, 2022, at 9:04 PM, HYE JUNG YOUN <hyejung7890@amc.seoul.krmailto:hyejung7890@amc.seoul.kr> wrote:
External Email - Use Caution Hi,
Just re-sending this message in case it didn’t go through to the developers, I am still searching for a solution to this problem.
I also found out that the originally converted mri.mgz , brainmask.mgz files are probably re-written – its file size changed to 0kB after I ran the code I sent in my previous email. Where do you think I went wrong?
Thanks for your help. H
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of HYE JUNG YOUN Sent: Wednesday, April 13, 2022 9:39 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Failed to load MRI error
External Email - Use Caution Dear freesurfer devleopers,
I am experiencing an error while loading freeview using the following code: [image005.png]
This always worked for me but now when I try to load and view it, a message “failed to load MRI” pops up on freeview after loading T1.mgz.
From the terminal it says:
error: mghRead(/Applications/freesurfer/7.2.0/subjects/211025/1079_4/mri/wm.mgz, -1): read error
MRIread failed: Unable to read from /Applications/freesurfer/7.2.0/subjects/211025/1079_4/mri/wm.mgz
Also, when I check the mri containing file, eg: 1079_4 folder, after loading freeview, the folder contains automatically generated –v and –f file.
[image006.png] I have seen a few similar errors on google and mail archive but they did not solve my issue. I would very much appreciate any solution to this.
Thank you in advance.
Best, HJ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1ZmwWGKHrQWCPm8fK7XhdeZpGYWQjUpWeL2xrbVxFDPlEUyJki9Cpto93jjT6E3kBudpId-QDN_rwRbK3NwjQtJRYT9do3euQz1x5mydfJnzQ14JelzFbwIKuNazG5bnDJfxifHap_UM6aVulQjk5qy5kPKFOPEviPlflnrRvZqp6W3lCLWS1hKAm-me1Jm3Qr8c1XrPk1kxGExd0vXmvXLN7-xojQip7J9mMPxPz198Vv19CKsoaiEtNbzwRpOIRC8ohNIqxHxmUgEOB6kdsI_3jPAHKs9TcN1dZHXyZkZYwdUE7fFrrFZqj0-CTruQTsAWzBYGgF4PWVStEWuU9uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
