sorry, I thought I answered this a while back. Try using -hemi lh instead of -lh
On 7/18/20 1:22 PM, Alina Rojas wrote:
External Email - Use Caution
Hello Freesurfer community,
I was wondering if you could look at the e-mail below. Thank you!
Alina
Anfang der weitergeleiteten Nachricht:
*Von: *Alina Rojas <alinacolora@gmail.com mailto:alinacolora@gmail.com> *Betreff: **One hemisphere recon-all ERROR* *Datum: *13. Juli 2020 um 15:25:18 MESZ *An: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu>
Hello Freesurfer community,
I'm attempting to compare the cortical thickness of one side of the brain between stroke subjects. I got "ERROR: you must include rh white and pial surfaces“. I used recon-all -sd ${TARGET_FOLDER}-subjid $SUBJECTID-i $T1-T2 $T2-qcache-all -3T -T2pial -lh. I attached the recon-all.log file. Ist it a way to get the aparc?
Thank you for your help,
Alina Rojas