Any chance that part of the left CST is truncated in this one subject? E.g., if the top part of the brain was outside the field of view?
Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Salar Dini, Elaheh elaheh.salardini@yale.edu Sent: Wednesday, June 29, 2022 11:38 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] trac-all -prep -c ERROR
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Dear experts,
I am running TRACULA for 90 subjects. Exceptionally, for one of the subjects, I get the following error in -prep step:
((INFO: Distances between consecutive points in test subject's space are 10 13 12 13 13 12 WARN: Could not find satisfactory control point fit - try 17034 Writing output files to /home2/am2359/fs6_data/TRACULA/subjects_dir/47/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /home2/am2359/fs6_data/TRACULA/subjects_dir/47/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Segmentation fault (core dumped) Linux tauruspet.med.yale.edu 3.10.0-693.el7.x86_64 #1 SMP Tue Aug 22 21:09:27 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Wed Jun 29 10:31:11 EDT 2022))
I am attaching the log file as well: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://drive.google.com/file/d/1pgEmkMtk4UoELpGR2bU_Vac-2BDr-eNy/view?usp=s...https://secure-web.cisco.com/1SmnY7WYnV1XRZV1hzFK0-fljtz5hTgSEDuVurOZOZqB22zXjeNXjwoJmMg8m0rebhhkBgEG85lX60uQdweaszlFaJK0aAf6k-tDqRHPeCrz3HbLV22IVyX0RGrImMTcUBc_63gMzWjWK9eyH69Bjr8g1UyxZXFkNJ3OsWaVuwX97x0BWhtcbbrQ_LY-JCZgpxP_XA6lSuz7dbq1KXKfR7hYJkRBpmu-dwHdY2yz8QubiCBLB8q20-RD8dv0uLOM-aXyamfQOU9KFfOAuT1t9aehuseGannHIdY4Fq30y2JAnFZ42owKAg-cUAjR6_wDxWve_BGI77yzfLgDi7CusPY_0vml2btWwy8N3p1xjaHs/https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F1pgEmkMtk4UoELpGR2bU_Vac-2BDr-eNy%2Fview%3Fusp%3Dsharing On a quick look, aparc+aseg seems to be properly done. Will you please help me to troubleshoot this if possible?
Thank you, Ela