27 Jun
2014
27 Jun
'14
2:28 p.m.
Hi Fs Experts, In order to calculate the right hemispheric white matter mean fractional anisotropy (FA), I did the following:
1. I used " rh.dwhite.ribon.mgz" as input in mri_binaraize to create a binary mask (I did convert mgz to nii and vice versa)
2. I used mri_segstats --seg /aseg.mgz --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt --i fa.anat.mgh -mask <MY BINARY MASK_THE OUTPUT OF MY PREVIOUS STEP>--sum fa.stats to generate the statistics .
Is that right? Kindly, Any suggestions or comments?
Thanks, Mohamad