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I tried this way, but I got lots of errors, as the attached file. What is the problem? Is there anything wrong with my data? Because I am using the online databases which I think it might be back to 2009 ish.
Thanks
On Thu, 8 Nov 2018 at 11:55, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
You have to specify an output directory with -targ and the runs you want to unpack with -run. See the help (ie, run dcmunpack with -help)
On 11/07/2018 05:38 PM, Maryam Tayebi wrote:
External Email - Use CautionHello Freesurfer Developers, I was going to reconstruct MPRAGE images from GE 3T machine. First I used this command: /dcmunpack -src . -scanonly scan.log/
It made just /scan.log/ file for me. Then I used this command: /unpacksdcmdir -src /<my dicoms pathways> -targ <my output directory> -scanonly scan.log/
However, it made 3 files for me; dicomdir.sumfile, parse.status and unpack.log, but they were 0 bites. Furthermore, the following message also appeared on the terminal:
/ERROR: parsing /hpc/mtay316/tutorial4/practice_with_data/dicoms/ See logfile /hpc/mtay316/tutorial4/practice_with_data//unpack.log for more details/
I used this command for SIEMENS data and it worked. Apparently this code just works on SIEMENS data not GE. So now what is the code that I can use for GE dcm images?
- FREESURFER Version:
freesurfer-x86_64-unknown-linux-gnu-stable6-20170118 2) Platform: Ubuntu 16.04 LTS 3) unpack.log : see attached
Regards
-- *Maryam Tayebi*
PhD Candidate of Bioengineering Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
MSc of Medical Imaging University of Manchester, Manchester, UK
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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