Hi,
To create the surface, I have to define the corpus callosum and the pons as well. I have been suggested to get a talairach transform first, so I did: (22970 is the subject folder)
$ talairach 22970
but I have received this message:
wpark% talairach 22970 registering 22970 mri_convert orig orig/orig.mnc reading from orig... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to orig/orig.mnc... Can't locate Getopt/Tabular.pm in @INC (@INC contains: /usr/local/mni/lib/mni_autoreg /System/Library/Perl/5.8.1/darwin-thread-multi-2level /System/Library/Perl/5.8.1 /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level /Network/Library/Perl/5.8.1 /Network/Library/Perl .) at /usr/pubsw/packages/mni/bin/mritotal line 56. BEGIN failed--compilation aborted at /usr/pubsw/packages/mni/bin/mritotal line 56. Error: could not open file "/usr/local/freesurfer_package/freesurfer/subjects/22970/mri/ transforms/talairach.xfm". System message: No such file or directory mri_add_xform_to_header: could not read xform file '/usr/local/freesurfer_package/freesurfer/subjects/22970/mri/ transforms/talairach.xfm'
No such file or directory [ogden:freesurfer_package/freesurfer/subjects] wpark%
I checked and I have no talairach.xfm under transforms. what should i do?
The COR-.info file in mri/wm does not have a line beginning with xform, so I added:
xform /usr/local/freesurfer_package/freesurfer/subjects/22970/mri/transforms/ talaraich.xfm
and ran the talairach 22970 again, but I received the same message.
Thanks!!
Wan