Re: [Freesurfer] Error Sourcing Freesurfer

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You could also try directly sourcing the FS-711 like this:

if using bash: source /usr/local/freesurfer/nmr-stable711-env-bash if using csh: source /usr/local/freesurfer/nmr-stable711-env ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Huang, Yujing YHUANG43@mgh.harvard.edu Sent: Tuesday, May 2, 2023 11:24 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Error Sourcing Freesurfer

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Hi Isabella,

‘fs-stable711-env-autoselect’ should be the string passed to fsenv script.

For example, to source 7.2.0 release:

If you are using csh: source /cluster/freesurfer/fsenv.csh 7.2.0

If you are using bash: source /cluster/freesurfer/fsenv.sh 7.2.0

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Turco, Isabella Sent: Tuesday, May 2, 2023 10:55 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error Sourcing Freesurfer

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Hello,

When trying to source Freesurfer version 7.1.1 using the command below, I’m getting the error “No such file or directory.”

source /usr/local/freesurfer/fs-stable711-env-autoselect

Any guidance on potential solutions would be much appreciated!

Thanks,

Isabella

Isabella Turco, B.S.

Senior Clinical Research Coordinator

Massachusetts General Hospital

Department of Anesthesia, Critical Care and Pain Medicine

617-643-2896

iturco@mgh.harvard.edumailto:iturco@mgh.harvard.edu