Dear Woo-Suk, Thanks for the interest in our work! It seems like you’re looking at the whole-structure volumes from SynthSeg? There should be another text file with all the other volumes. Also: I would recommend the “simplified” parcellation; it does a better job with the brainstem / midbrain regions… Cheers, /Eugenio
-- Juan Eugenio Iglesias http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Woo-Suk Tae woostae@gmail.com Date: Sunday, September 29, 2024 at 23:42 To: Freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] NextBrain with 333 labels
External Email - Use Caution Dear FreeSurfer experts
I tried to segment my brain MRI using NextBrain.in the most recent FreeSurfer-dev package. I followed the command in MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/HistoAtlasSegmentationhttps://secure-web.cisco.com/150f92dNZNQHVJBK1fmC5Z4FYOqCYvgP1aIrq7dafQUxfyrR4wSHgPGLPwf0jxqrEBJqs-9YISyUo_u7_Onm0V3w4yaWygtLcx1JF4i9WiTS5ZTKPYLpQ9-Uldh3wQBbbZnRbsvvb1KbOyJKF22HkqyG58bxFrVQFGJXDy_a4M7FZc0gRtGZpqDcgI6QO9YXZPxhk3WjEmkZSigkBreI_rFTBD5mwSU5vIedOcNAPpUHyOikwtFDi3Kw5s7y7Mqm9IfFqXmCnJ9xzSxY-6naJGV0bla9PAJdSX4xLSPaNx8eeO2_FIgx2gjXODXa6uhZ-E0YDfbNW-KE64Udylt4MWQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FHistoAtlasSegmentation, but, I got only the volumes of 101 labels How can I got the 333 labels and volumes using NextBrain? my command as follows mri_histo_atlas_segment ../subject/mri/orig.mgz ..subject/mri/histo_atlas_segmentation/ full 1 -1
Best regards
Woo-Suk Tae Seoul, Korea -------------------------------------------------------------------- Woo-Suk, Tae Ph.D. Research Professor Brain Convergence Research Center, Korea University College of Medicine, Seoul, Korea mobile: 82-10-9120-4629 office: 82-2-920-6077 email: woosuk.tae@gmail.commailto:woosuk.tae@gmail.com, wmailto:woosuk.tae@kumc.or.krstae@korea.ac.krmailto:stae@korea.ac.kr woostae@naver.commailto:woostae@naver.com --------------------------------------------------------------------