Hi again.
I think I can obtain fdr maps by: mri_surfcluster --in sig.mgh --subject fsaverage --hemi lh --annot aparc --sign pos --o fdr_005_lh_pos.mgh --fdr 0.05 --cortex --mask mask.mgh
Can anyone comment if the above command is right to generate a clusterwise fdr corrected p<0.05?
Thanks
Regards
MV
On Fri, Oct 7, 2016 at 1:11 PM, neuroimage analyst < neuroimage.analyst@gmail.com> wrote:
Hi,
I was wondering if there is a way to perform fdr correction using command line in freesurfer without using matlab as mri_glmfit-sim only does bonferroni ?
Thanks Regards MV