External Email - Use Caution
Hello Daniel. It looks like you need a slash in front of Volumes for the path after —I/Volumes - R.
On Feb 13, 2019, at 14:44, Daniel Davidson Callow <dcallow@umd.edu> wrote: External Email - Use Caution Hello,I am trying to run dt_recon on my dti data using the following script.dt_recon --debug --i Volumes/DANIEL/tutorial_data/diffusion_recons/${subj}.${cond}/1-65.dcm --s ${subj}.${cond} --o /Volumes/DANIEL/tutorial_data/dtreconwith the following errorecho "ERROR: cannot find $InputVol"echo ERROR: cannot find Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcmERROR: cannot find Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcmgoto error_exit ;the DICOM files are named image000001.dcm through image000065.dcmThese were 64 gradient images acquired on a SIEMENS scanner with 1 bo image. Any advice on how I should structure this command would be greatly appreciated!Daniel CallowPhD Student, Neuroscience and Cognitive ScienceExercise for Brain Health LabUniversity of Maryland, College Parkdcallow@umd.edu443-254-6298_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer