Dear Freesurfer experts
I was running recon-all command with hires flag for our high resolution fMRI data, but it has been in a constant status since yesterday.
I copied the last few lines that are currently in my terminal. I had the same issue with another subject before, and I had to terminate the recon-all and run it without -hires.
Could you please let me know how I can solve this issue?
Thanks
Mona
#@# Fix Topology Copy rh Wed Feb 20 19:50:00 EST 2019 /autofs/space/oprah_001/users/jvm27/looming/SUBJECTS_DIR/inul_loom2_7T/scripts
cp ../surf/rh.orig.nofix ../surf/rh.orig
cp ../surf/rh.inflated.nofix ../surf/rh.inflated
#@# Fix Topology lh Wed Feb 20 19:50:03 EST 2019
mris_fix_topology -rusage /autofs/space/oprah_001/users/jvm27/looming/SUBJECTS_DIR/inul_loom2_7T/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 inul_loom2_7T lh
#@# Fix Topology rh Wed Feb 20 19:50:03 EST 2019
mris_fix_topology -rusage /autofs/space/oprah_001/users/jvm27/looming/SUBJECTS_DIR/inul_loom2_7T/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 inul_loom2_7T rh
Waiting for PID 8994 of (8994 8997) to complete...