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Dear Freesurfer course team,
I hope everything is going great in Boston. My name is Aimee Flores and I took the freesurfer course online last June. I have a follow-up question about freesurfer brainmask correction. Is it possible that after a brainmask correction the aseg file gets distorted so that it seems like a sulci is displaced? Do you know what could be causing this and any possible solutions?
Best wishes, Aimee Flores
----- Forwarded Message ----- From: "Nastya Asmolova" asmolova@cbs.mpg.de To: "Aimee Flores" flores@cbs.mpg.de Sent: Monday, August 10, 2026 1:19:49 PM Subject: Re: Correction successful?
Dear Aimee,
Thank you so much for following up! Unfortunately, M1 is still shifted com[pared to the uncorrected one. I'm attaching the screenshots and the log file
Best, Nastya
----- Original Message -----
From: "Aimee Flores" flores@cbs.mpg.de To: "Anastasiia Asmolova" asmolova@cbs.mpg.de Sent: Monday, August 10, 2026 1:00:00 PM Subject: Correction successful?
Dear Nastya,
Did the run from the person modified segmentation in M1 correction worked out? otherwise to ask the freesurfer team as would be nice to know how to troubleshooting it in case it happens again.
Best wishes, Aimee
-- PhD candidate at Charité – Universitätsmedizin Berlin Neurology Department. Max Planck Institute for Human Cognitive and Brain Sciences. Stephanstrasse 1a, 04103 Leipzig, Germany. Tel: +49(0)3419940-2256 Neurotech Stroke project Instagram: https://secure-web.cisco.com/1YS5lXrLnMNM_5TlAI27ASFSPVjgKOjoFupQFsrcuDRUQ58... X: https://secure-web.cisco.com/1qM3WEUFoDUa_NdeSPS-F92GXo3K6ZNvyETk_3Dn2hQXiq-... LinkedIn: http://secure-web.cisco.com/1WO5sk1ictowpW-cjnUecvx5sCaCN6NYsK3ucWO5RXOhE5Ot... YouTube: https://secure-web.cisco.com/1iKg9eDxIJY1kgP9trmCk0m-U-G7o7FRuHXUI8xUHdc40xP... Website: https://secure-web.cisco.com/1LPLCxKWlInoXoLNKDsec0-6p03LF7lkf1plcabzzhB1JUl...
