Hi Barbara,
Yes, you can use recon-all-clinical for the enhanced T1. But, the surface reconstruction might fail and in that case, you might have to try running SynthSR + recon-all.
Thank you, Karthik
On Jun 13, 2024, at 1:30 AM, Barbara Bellenberg Barbara.Bellenberg@ruhr-uni-bochum.de wrote:
External Email - Use Caution
Dear all,
I would like to use the recon-all-clinical pipeline with Gadolinium contrast-enhanced 3D-T1 weighted images. Can you tell me if recon-all-clinical is suitable for this purpose?
Thanks in adcance for your support!
Barbara
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer