Hi Joel
can you include the entire thread when responding? Usually overlay is a suboption in freeview. So it would probably be something like:
freeview -f lh.inflated:overlay=lh.overlay.mgz
cheers Bruce
On Tue, 4 Oct 2016, Joel Bruss wrote:
.mgz format made no difference. I see no option for "overlay" in freeview., I only get that option with tksurfer. The image is blank when loaded as a volume in freeview. It loads forever when I try to load it as a surface (I just get the 0-100% progress bar conintually loading with no end). If I try to load the rh.pial as a surface, then load the file as a volume overlay, it crashes freeview.
A few days back, Anna Crawford had a thread entitled "Volume to Surface" where she provided a pic of the inflated surface and the output of wmparc on the surface. If I try to run the exact same commands she did, I can't get any pics in freeview and it just crashes on me. FWIW, I'm running freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.
On 10/03/2016 04:08 PM, Trisanna Sprung-Much wrote:
I think it might have to do with the format of your output file - perhaps try .mgz? This is what I used.
Then open the surface and use the "overlay" option to overlay your ROI as a surface overlay.
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