Hi Heidi, segmentation of amygdalar subregions is currently not yet implemented in FreeSurfer, but we are working on including this feature soon.
Best, Dorit
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Message: 9 Date: Fri, 8 Jan 2016 13:21:48 +0000 From: "Jacobs H (NP)" h.jacobs@maastrichtuniversity.nl Subject: [Freesurfer] amygdala nuclear subregions To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: D2B5767A.155A7%h.jacobs@maastrichtuniversity.nl Content-Type: text/plain; charset="iso-8859-1"
Dear FreeSurfer developers,
In the FreeSurferColorLut file I see labels for the subregions of the amygdala. Is it possible to extract the volumes for these regions? And how can I do this? I don't see them in the aseg or aparc stat files.
Many thanks! Heidi