Hi all,
Is -T2 used only in -autorecon3 as shown herehttps://surfer.nmr.mgh.harvard.edu/fswiki/recon-all#Other:
recon-all -subject subjectname -T2 /path/to/T2_volume -T2pial -autorecon3
In other words, if I do:
recon-all -subject subjectname -i /path/to/input_volume -T2 /path/to/T2_volume -T2pial -all
Will only -autorecon3 make use of the provided -T2 and not -autorecon1 or -autorecon2?
I think the answers are yes because -T2 appears under -autorecon3 only in ReconAllDevTablehttps://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable.
Best, Tashrif
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Tashrif Billah, MShttps://www.linkedin.com/in/tashrif-billah/
Research Engineer
Brigham and Women's Hospital
Harvard Medical School
tbillah@bwh.harvard.edumailto:tbillah@bwh.harvard.edu