The brain.mgz doesn't exist in that location. How did you create it? Maybe it in a subject's dir?
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Rachel Wagner Sent: Tuesday, June 28, 2022 2:26 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error Opening File
External Email - Use Caution Hello,
I am getting the following error when trying to convert a file on my desktop:
developer@developer-VirtualBox:~$ mri_convert home/developer/desktop/brain.mgz brain.nii mri_convert home/developer/desktop/brain.mgz brain.nii reading from home/developer/desktop/brain.mgz... error: mghRead(home/developer/desktop/brain.mgz, -1): could not open file developer@developer-VirtualBox:~$
Am I doing something incorrectly?
Thanks! Rachel