Can you elaborate? What do you mean it is not working as it should be?
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Peng Liu Sent: Thursday, June 25, 2020 7:23 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brodmann area labels
External Email - Use Caution Hi Bruce,
I have tried this label, but it seems not working as it should be. That is why I wanted to create labels like before.
Thank you so much!
PL
On Wed, 24 Jun 2020 at 16:58, Fischl, Bruce <BFISCHL@mgh.harvard.edumailto:BFISCHL@mgh.harvard.edu> wrote: Hi Peng
I think 'lh.BA3b_exvivo.label' is the label you want. The _exvivo just means that the data that went into the prediction was acquired on ex vivo brains. Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Peng Liu Sent: Wednesday, June 24, 2020 7:38 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Brodmann area labels
External Email - Use Caution Dear Freesurfer experts,
I was trying to perform some ROI analysis with results obtained from recon-all. However I noticed that after recon-all, the labels created were like 'lh.BA3b_exvivo.label', whereas the labels I would want to create are like 'lh.BA3b.label'.
I have tried mri_annotation2label command, but the results I got were not as wanted either.
Does anyone know how to create labels like 'lh.BA3b.label'?
Any help would be appreciated a lot!
Many Thanks
PL -------------------------------------------- [Otto-von-Guericke University Magdeburg][https://www.dzne.de/typo3temp/assets/_processed_/c/f/csm_logo_de_9eb671b7ff....]
Peng Liu, PhD Candidate
Institut für Kognitive Neurologie und Demenzforschung (IKND) Otto-von-Guericke Universität Magdeburg Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE)
Leipziger Str. 44| Haus 64| Raum 217 39120 Magdeburg, Deutschland
Email: peng.liu@med.ovgu.de/Peng.Liu@dzne.dehttp://peng.liu@med.ovgu.de/Peng.Liu@dzne.de Phone: +49 391 67 25074 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer