That worked like a charm.
Thanks!
On Wed, Oct 23, 2013 at 5:14 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
try specifying --sval-annot Yeo2011_17Networks_N1000.annot instead of --srcsurfval
cheers Bruce
On Wed, 23 Oct 2013, Paul Beach wrote:
Apologies: the full error message was: 'could not determine type of
lh.Yeo2011_17Networks_N1000.**annot' I tried your suggestion of removing the hemispheric designation in front of 'Yeo' and I'm getting the same error - - the same occurs if I remove the '.annot' at the end. mri_surf2surf --srcsubject fsaverage \ --srcsurfval Yeo2011_17Networks_N1000.annot \ --trgsubject HS_001 --trgsurfval Yeo_17Network_native.annot --hemi lh ERROR: could not determine type of Yeo2011_17Networks_N1000
Thoughts?
Cheers, Paul
On Wed, Oct 23, 2013 at 3:49 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
The full error msg is not in the subject line. My guess is that the "lh." in front of "Yeo" in the srcsurfval is causing the problem On 10/23/2013 03:17 PM, Paul Beach wrote: > Hello FS experts, > > I'm attempting to transform the Yeo2011 annotations (lh & rh) from > fsaverage to individual subjects so as to then sample the cortical > maps to subject surfaces using mri_label2vol. However, I'm getting the > error in the subject line when I put in the following commands: >/mri_surf2surf --srcsubject fsaverage / /--srcsurfval lh.Yeo2011_17Networks_N1000.**annot / /--trgsubject HS_001 --trgsurfval lh.Yeo_17Network_native.annot
--hemi lh/
I suspected that I have to put a src_type and trg_type in there, but
I
wasn't sure what type of types would be appropriate for use in mri_label2vol. For the latter command I was planning on utilizing something similar to a previous e-mailer's command (below): /mri_label2vol --annot lh.Yeo2011_17Networks_N1000.**HS_001.annot / /--o outfile.nii.gz --hemi lh --subject HS_001 / /--temp $SUBJECTS_DIR/HS_001/mri/orig.**mgz --identity/
Any suggestions for getting past this error?
Thanks for your help, Paul -- Paul Beach DO/PhD candidate - Year VI Michigan State University
- College of Osteopathic Medicine
- Neuroscience Program
- Bozoki Lab: Neurology/Radiology
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-- Paul Beach DO/PhD candidate - Year VI Michigan State University
- College of Osteopathic Medicine
- Neuroscience Program - Bozoki Lab: Neurology/Radiology