Apologies: the full error message was: '*could not determine type of lh.Yeo2011_17Networks_N1000.annot*'

I tried your suggestion of removing the hemispheric designation in front of 'Yeo' and I'm getting the same error - - the same occurs if I remove the '.annot' at the end. *mri_surf2surf --srcsubject fsaverage * *--srcsurfval Yeo2011_17Networks_N1000.annot * *--trgsubject HS_001 --trgsurfval Yeo_17Network_native.annot --hemi lh* *ERROR: could not determine type of Yeo2011_17Networks_N1000*

Thoughts?

Cheers, Paul

On Wed, Oct 23, 2013 at 3:49 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:

The full error msg is not in the subject line. My guess is that the "lh." in front of "Yeo" in the srcsurfval is causing the problem

On 10/23/2013 03:17 PM, Paul Beach wrote:

...

Hello FS experts,

I'm attempting to transform the Yeo2011 annotations (lh & rh) from fsaverage to individual subjects so as to then sample the cortical maps to subject surfaces using mri_label2vol. However, I'm getting the error in the subject line when I put in the following commands:

/mri_surf2surf --srcsubject fsaverage / /--srcsurfval lh.Yeo2011_17Networks_N1000.annot / /--trgsubject HS_001 --trgsurfval lh.Yeo_17Network_native.annot --hemi

lh/

...

I suspected that I have to put a src_type and trg_type in there, but I wasn't sure what type of types would be appropriate for use in mri_label2vol. For the latter command I was planning on utilizing something similar to a previous e-mailer's command (below): /mri_label2vol --annot lh.Yeo2011_17Networks_N1000.HS_001.annot / /--o outfile.nii.gz --hemi lh --subject HS_001 / /--temp $SUBJECTS_DIR/HS_001/mri/orig.mgz --identity/

Any suggestions for getting past this error?

Thanks for your help, Paul -- Paul Beach DO/PhD candidate - Year VI Michigan State University

• College of Osteopathic Medicine
• Neuroscience Program
  • Bozoki Lab: Neurology/Radiology

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That worked like a charm.

Thanks!

On Wed, Oct 23, 2013 at 5:14 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:

try specifying --sval-annot Yeo2011_17Networks_N1000.annot instead of --srcsurfval

cheers Bruce

On Wed, 23 Oct 2013, Paul Beach wrote:

Apologies: the full error message was: 'could not determine type of

...

lh.Yeo2011_17Networks_N1000.**annot' I tried your suggestion of removing the hemispheric designation in front of 'Yeo' and I'm getting the same error - - the same occurs if I remove the '.annot' at the end. mri_surf2surf --srcsubject fsaverage \ --srcsurfval Yeo2011_17Networks_N1000.annot \ --trgsubject HS_001 --trgsurfval Yeo_17Network_native.annot --hemi lh ERROR: could not determine type of Yeo2011_17Networks_N1000

Thoughts?

Cheers, Paul

On Wed, Oct 23, 2013 at 3:49 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:

  The full error msg is not in the subject line. My guess is that
  the
  "lh." in front of "Yeo" in the srcsurfval is causing the problem


  On 10/23/2013 03:17 PM, Paul Beach wrote:
  > Hello FS experts,
  >
  > I'm attempting to transform the Yeo2011 annotations (lh & rh)
  from
  > fsaverage to individual subjects so as to then sample the
  cortical
  > maps to subject surfaces using mri_label2vol. However, I'm
  getting the
  > error in the subject line when I put in the following
  commands:
  >

...

/mri_surf2surf --srcsubject fsaverage / /--srcsurfval lh.Yeo2011_17Networks_N1000.**annot / /--trgsubject HS_001 --trgsurfval lh.Yeo_17Network_native.annot

--hemi lh/

...

I suspected that I have to put a src_type and trg_type in there, but

I

...

wasn't sure what type of types would be appropriate for use in mri_label2vol. For the latter command I was planning on utilizing something similar to a previous e-mailer's command (below): /mri_label2vol --annot lh.Yeo2011_17Networks_N1000.**HS_001.annot / /--o outfile.nii.gz --hemi lh --subject HS_001 / /--temp $SUBJECTS_DIR/HS_001/mri/orig.**mgz --identity/

Any suggestions for getting past this error?

Thanks for your help, Paul -- Paul Beach DO/PhD candidate - Year VI Michigan State University

• College of Osteopathic Medicine
• Neuroscience Program
  • Bozoki Lab: Neurology/Radiology

______________________________**_________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurferhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/**fswiki/BugReportinghttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.**edu/filedrop2https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/**facility/filedrop/index.htmlhttp://www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/**greve/ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

______________________________**_________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurferhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- Paul Beach DO/PhD candidate - Year VI Michigan State University

• College of Osteopathic Medicine
• Neuroscience Program - Bozoki Lab: Neurology/Radiology