External Email - Use Caution
Thank you for your reply. I also want to know which file has just finished with 1-3 steps? Is it nu.mgz? Or nu.mgz?
*T1.mgz * aseg.presurf.mgz
aparc+aseg.mgz brain.finalsurfs.mgz * norm.mgz
aparc.DKTatlas+aseg.mgz *brain.mgz *
*nu.mgz* aparc.a2009s+aseg.mgz brainmask.auto.mgz
aseg.auto.mgz brainmask.mgz
*orig.mgz * ctrl_pts.mgz *orig_nu.mgz *
wm.asegedit.mgz aseg.auto_noCCseg.mgz filled.mgz
rawavg.mgz wm.mgz
aseg.mgz lh.ribbon.mgz
rh.ribbon.mgz wm.seg.mgz aseg.presurf.hypos.mgz
ribbon.mgz wmparc.mgz
Best, ping
Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu 于2019年6月23日周日 下午9:35写道：
It does 1-3. It also labels cerebellum which you could then use to perform #4
On 6/23/2019 7:03 AM, ping cao wrote:
External Email - Use CautionDear expert，
Thank you for reading!
I want to do these four pre-processing steps:
Re-sampling each MR image to 256*256*256;
Using the N3 algorithm for intensity inhomogeneity correction;
Skull stripping;
Removing the cerebellum.
Does " *recon-all"* do all the above 4 steps automatically? If so, which file is just finished with these four steps? If not, how can I do these steps?
Your help is greatly appreciated.
Best, ping
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