Re: [Freesurfer] Mean Thickness for each hemisphere from ?.aparc.stats

Thanks Doug, I used the first link and works perfectly now!

Best regards, Amirhossein Manzouri

On Tue, May 20, 2014 at 5:03 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:

I just ran it, and it works fine. It may be that I need to give you more libraries.

Start with this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fsutils.py

Copy it into $FREESURFER_HOME/bin (after making a backup of the original one)

If that still does not work, then copy this one

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fsutils.pyc

doug

On 05/20/2014 04:36 AM, amirhossein manzouri wrote:

...

Dear Doug, Kindly find attached a sample of my lh.aparc.stats file!

Best regards, Amirhossein Manzouri

On Mon, May 19, 2014 at 7:59 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

Can you send me your lh.aparc.stats file?
doug


On 05/14/2014 01:41 PM, amirhossein manzouri wrote:


    Yes!


    On May 14, 2014 7:16 PM, "Douglas N Greve"
    <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>> wrote:


        Is the mean thickness in the ?h.aparc.stats file?
    Something like

        # Measure Cortex, MeanThickness, Mean Thickness, 2.27227, mm


        On 05/13/2014 05:18 PM, amirhossein manzouri wrote:

            Hi,
            The same result! the last is insula !


            Best regards,
            Amirhossein Manzouri




            On Mon, May 12, 2014 at 5:05 PM, Douglas N Greve
            <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
            <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>

            <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:

                Try this version
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/

greve/aparcstats2table

                On 05/12/2014 03:41 AM, amirhossein manzouri wrote:

                    Hi again,
                    I think I missed my question, How can I get
    the Mean
            Thickness
                    of each hemisphere for several subjects using the
                    aparcstats2table command?

                    On Fri, May 9, 2014 at 4:28 PM, amirhossein
    manzouri
                    <a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>
            <mailto:a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>>
    <mailto:a.h.manzouri@gmail.com <mailto:a.h.manzouri@gmail.com>
            <mailto:a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>>>
                    <mailto:a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>
            <mailto:a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>>
                    <mailto:a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>
            <mailto:a.h.manzouri@gmail.com
    <mailto:a.h.manzouri@gmail.com>>>>> wrote:

                        Dear Doug,
                        I have read this
                                             post(

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg25218.html ) regarding extracting Mean Cth of each hemisphere and I just get insula as the last and totally 34 numbers, I use aparcstats2table --hemi lh --subjects bert -m thickness --tablefile lh.Cth.bert.txt

                        Best regards,
                        Amirhossein Manzouri




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                MGH-NMR Center
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--     Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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Outgoing:
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/