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Hello FreeSurfer Developers,
I have a problem to convert the files using the recon-all. It appears, recon-all -s 1 exited with ERRORS.
Before I had the last version (stable v6.0.0). As I did not find a solution of how to fix this problem, so I decided to make a downgrade to the previous version (5.3.0 stable). I thought that maybe the oldest version of this program was solved. But no, I still have the same problem. How I can fix this problem permanently?
My code is: $ export SUBJECTS_DIR=/home/regal/Data/Subjects/test_old_version $ recon-all -s 1 /home/regal/Data/Subjects/test_old_version/01C_dislebi_T1.nii -autorecon-all
than:
" ERROR: Flag /home/regal/Data/Subjects/test_old_version/01C_dislebi_T1.nii unrecognized. -s 1 /home/regal/Data/Subjects/test_old_version/01C_dislebi_T1.nii -autorecon-all Linux genedys2 4.15.0-2-amd64 #1 SMP Debian 4.15.11-1 (2018-03-20) x86_64 GNU/Linux
recon-all -s 1 exited with ERRORS at Tue Jul 3 18:47:19 CEST 2018
For more details, see the log file To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting "
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 2) Platform: Linux genedys2 4.15.0-2-amd64 #1 SMP Debian 4.15.11-1 (2018-03-20) x86_64 GNU/Linux
Thank you for your help,
Best regards