I check the recon-all.log. It appears that the cortical region for caudalanteriorcongulate for this subject is very small..
table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name
597 390 747 1.952 0.684 0.137 0.104 395 2.7 bankssts 29 18 42 2.705 0.791 0.131 0.040 0 0.1 caudalanteriorcingulate
Daniel
-- Yung-Jui "Daniel" Yang, PhD Postdoctoral Researcher Yale Child Study Center New Haven, CT (203) 737-5454
On 8/5/13 5:52 PM, "Douglas Greve" <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
That is a little strange. Can you look at the wmparc.mgz to see if it is there? Also look at the aparc+aseg.mgz to see how big the cortical region for caudalanteriorcingulate is. The wmparc is based on the aparc part of aparc+aseg. doug
On 8/5/13 12:49 PM, Yang, Daniel wrote: Dear FreeSurfer Experts,
I'm looking at stats/wmparc.stats, and there are some inconsistencies between subjects. I am wondering what might be the cause.
For one subject (say subject 1), part of the information appears to be:
# NRows 66 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 3001 1869 1869.0 wm-lh-bankssts 101.6999 9.1445 69.0000 127.0000 58.0000 2 3003 1776 1776.0 wm-lh-caudalmiddlefrontal 98.1676 8.5074 75.0000 125.0000 50.0000 3 3005 710 710.0 wm-lh-cuneus 103.7088 10.1493 78.0000 134.0000 56.0000 4 3006 106 106.0 wm-lh-entorhinal 84.5902 9.0358 55.0000 96.0000 41.0000
For the other subject (subject 2), it appears to be:
# NRows 70 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 3001 1012 1012.0 wm-lh-bankssts 93.6101 10.0971 71.0000 130.0000 59.0000 2 3002 1732 1732.0 wm-lh-caudalanteriorcingulate 104.3373 10.6871 58.0000 126.0000 68.0000 3 3003 4743 4743.0 wm-lh-caudalmiddlefrontal 95.2809 11.5139 66.0000 117.0000 51.0000 4 3005 1488 1488.0 wm-lh-cuneus 91.9310 10.1995 64.0000 126.0000 62.0000 5 3006 398 398.0 wm-lh-entorhinal 75.3343 9.0664 55.0000 101.0000 46.0000
Thus, in subject 1, there is no estimate for 3002, wm-lh-caudalanteriorcingulate, and the NRows is different.
Could you please help? Both are analyzed by FreeSurfer 5.1.0.
Thanks, Daniel
-- Yung-Jui "Daniel" Yang, PhD Postdoctoral Researcher Yale Child Study Center New Haven, CT (203) 737-5454
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