The conformed space is an anatomical one, so I’m still not clear what “anatomical space” you want to map it to. What are you trying to do with it? And when you visualize the label in freeview in the volume does it appear in the correct location?
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Sam W Sent: Friday, June 3, 2022 10:46 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] labels in anatomical space
External Email - Use Caution Hi Bruce,
Thanks for your help! I got the label after running mri_annotation2label using the label\lh.aparc.annot file on an individual subject. I always assumed (maybe wrongly) that labels correspond to surfaces and are defined in freesurfer's conformed space.
Best regards, Sam
On Fri, Jun 3, 2022 at 4:33 PM Fischl, Bruce <BFISCHL@mgh.harvard.edumailto:BFISCHL@mgh.harvard.edu> wrote: Hi Sam
We need more information. What do you mean by “freesurfer space”? Is it on an individual subject or fsaverage? Volume or surface? How did you create it?
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Sam W Sent: Friday, June 3, 2022 9:12 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] labels in anatomical space
External Email - Use Caution Hello! I have a label in freesurfer space, and I would like it to be in anatomical space. Is this possible? Best regards, Sam _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1mojxR-1OOXsOtDAMbDKjAngAbJ-L-3Iq09D_j67IIdU99FzF5-mwhdRutXhPvEWcGM-PoS-ynoHNGRKVW8dzr8D48U7yE53HhJvRPQqqxQU0JHfGPg5csHbmFwT80iYnQ7OiqKZec58NE2NidbFwq-6zntJ768fkAyHa9NkJD4_6vI7d31tNwSa0o4Uv5p598KPP21tvgxer7PYlUc0B1Bcr28IG3jqHHMOhMJqPUM0f2mrcebArSOOy4dkDcIz8g6AtFpF-zjQCSw-aI-mQTF1ydPRKlHucGTFqpO6rd7jh9sAVcBAgyQKbiI6SG--NSaT5p0pqGyXe_XawyUQMnw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/compliancelinehttps://secure-web.cisco.com/1QuJFxb7rljcWUxshdW3XryGEdV1eUcbaL8IfprENcCPyVcJFSz8eNhDFoycHCUcqM4fR4xbVgLd8KxmY7Q77TE9t_Cb0cK8PV9DagnMK4Wzh8lu4EZmWYwaXOKfiRgsE_SlDEomWPKifb6BkuVe1OaXqkIGKX2SaPBZdP0ryA-RODRdOp7yqKd4max8i0ygfR4bF1yGclXbAmIwIe0tlgz3dySnHVUWlbosQyUCtTXfPH_JK-CYA7L4Joh09Ti2p7mUeHrAxCNRR7mVE1i244xh1urUyNIHyJ9h6y3r7-FsgoRSQBgF2WttT4oFSp0NO3vWIPsl68MFnU1KW--aK7w/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/compliancelinehttps://secure-web.cisco.com/1QuJFxb7rljcWUxshdW3XryGEdV1eUcbaL8IfprENcCPyVcJFSz8eNhDFoycHCUcqM4fR4xbVgLd8KxmY7Q77TE9t_Cb0cK8PV9DagnMK4Wzh8lu4EZmWYwaXOKfiRgsE_SlDEomWPKifb6BkuVe1OaXqkIGKX2SaPBZdP0ryA-RODRdOp7yqKd4max8i0ygfR4bF1yGclXbAmIwIe0tlgz3dySnHVUWlbosQyUCtTXfPH_JK-CYA7L4Joh09Ti2p7mUeHrAxCNRR7mVE1i244xh1urUyNIHyJ9h6y3r7-FsgoRSQBgF2WttT4oFSp0NO3vWIPsl68MFnU1KW--aK7w/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.