16 Sep
2017
16 Sep
'17
11:38 a.m.
sorry, can you clarify what your question is?
On Sat, 16 Sep 2017, Fereshte wrote:
Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something? Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte fereshte.ramezani@gmail.com wrote: Hi Bruce, Thank you for your replies. Cheers
On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Fereshte
the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS papers cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > What's the algorithm used to expand inner cortical boundary ( to achieve the outer cortical boundary > in pial surface) in FreeSurfer? > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > it will give the interior volume of whatever surface you give it as a > command line argument. > > On Mon, 4 Sep 2017, Fereshte > wrote: > > > Using the Pial surface; Does it mean mris_volume will give the inner cortical boundary > of the > > surface and not the outer boundary? > > Sincerely, > > Fereshte Ramezani > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com> wrote: > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > > sure, mris_volume will give you the interior volume of any closed surface > > using the divergence formula. Note that this is *not* the volume of the > > ribbon but rather the volume of the entire interior > > > > cheers > > Bruce > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > Hello FreeSurfer developersIs it possible to have the volume of pial surface > in > > FreeSurfer? > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it is > > addressed. If you believe this e-mail was sent to you in error and the e-mail > > contains patient information, please contact the Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you in error > > but does not contain patient information, please contact the sender and properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.