Using the Pial surface; Does it mean mris_volume will give the inner cortical boundary of the surface and not the outer boundary? Sincerely, Fereshte Ramezani On Mon, Sep 4, 2017 at 9:53 PM Fereshte fereshte.ramezani@gmail.com wrote:
On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior
cheers Bruce
On Mon, 4 Sep 2017, Fereshte wrote:
Hello FreeSurfer developersIs it possible to have the volume of pial
surface in FreeSurfer?
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it will give the interior volume of whatever surface you give it as a command line argument.
On Mon, 4 Sep 2017, Fereshte wrote:
Using the Pial surface; Does it mean mris_volume will give the inner cortical boundary of the surface and not the outer boundary? Sincerely, Fereshte Ramezani On Mon, Sep 4, 2017 at 9:53 PM Fereshte fereshte.ramezani@gmail.com wrote:
On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > Hello FreeSurfer developersIs it possible to have the volume of pial surface in FreeSurfer? > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
What's the algorithm used to expand inner cortical boundary ( to achieve the outer cortical boundary in pial surface) in FreeSurfer? On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
it will give the interior volume of whatever surface you give it as a command line argument.
On Mon, 4 Sep 2017, Fereshte wrote:
Using the Pial surface; Does it mean mris_volume will give the inner
cortical boundary of the
surface and not the outer boundary? Sincerely, Fereshte Ramezani On Mon, Sep 4, 2017 at 9:53 PM Fereshte fereshte.ramezani@gmail.com
wrote:
On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
sure, mris_volume will give you the interior volume of any closedsurface
using the divergence formula. Note that this is *not* the volumeof the
ribbon but rather the volume of the entire interior cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > Hello FreeSurfer developersIs it possible to have the volume ofpial surface in
FreeSurfer? > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person towhom it is
addressed. If you believe this e-mail was sent to you in error andthe e-mail
contains patient information, please contact the PartnersCompliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sentto you in error
but does not contain patient information, please contact thesender and properly
dispose of the e-mail.
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Hi Fereshte
the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS papers
cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote:
What's the algorithm used to expand inner cortical boundary ( to achieve the outer cortical boundary in pial surface) in FreeSurfer? On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: it will give the interior volume of whatever surface you give it as a command line argument.
On Mon, 4 Sep 2017, Fereshte wrote: > Using the Pial surface; Does it mean mris_volume will give the inner cortical boundary of the > surface and not the outer boundary? > Sincerely, > Fereshte Ramezani > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com> wrote: > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > sure, mris_volume will give you the interior volume of any closed surface > using the divergence formula. Note that this is *not* the volume of the > ribbon but rather the volume of the entire interior > > cheers > Bruce > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > Hello FreeSurfer developersIs it possible to have the volume of pial surface in > FreeSurfer? > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Bruce, Thank you for your replies. Cheers On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Fereshte
the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS papers
cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote:
What's the algorithm used to expand inner cortical boundary ( to achieve
the outer cortical boundary
in pial surface) in FreeSurfer? On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
it will give the interior volume of whatever surface you give itas a
command line argument. On Mon, 4 Sep 2017, Fereshte wrote: > Using the Pial surface; Does it mean mris_volume will give theinner cortical boundary
of the > surface and not the outer boundary? > Sincerely, > Fereshte Ramezani > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com> wrote:
> > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> sure, mris_volume will give you the interior volume of anyclosed surface
> using the divergence formula. Note that this is *not* thevolume of the
> ribbon but rather the volume of the entire interior > > cheers > Bruce > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > Hello FreeSurfer developersIs it possible to have thevolume of pial surface
in > FreeSurfer? > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > The information in this e-mail is intended only for theperson to whom it is
> addressed. If you believe this e-mail was sent to you inerror and the e-mail
> contains patient information, please contact the PartnersCompliance HelpLine at
> http://www.partners.org/complianceline . If the e-mailwas sent to you in error
> but does not contain patient information, please contactthe sender and properly
> dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person towhom it is
addressed. If you believe this e-mail was sent to you in error andthe e-mail
contains patient information, please contact the PartnersCompliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sentto you in error
but does not contain patient information, please contact thesender and properly
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Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something? Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte fereshte.ramezani@gmail.com wrote:
Hi Bruce, Thank you for your replies. Cheers
On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Fereshte
the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS papers
cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote:
What's the algorithm used to expand inner cortical boundary ( to
achieve the outer cortical boundary
in pial surface) in FreeSurfer? On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
it will give the interior volume of whatever surface you give itas a
command line argument. On Mon, 4 Sep 2017, Fereshte wrote: > Using the Pial surface; Does it mean mris_volume will give theinner cortical boundary
of the > surface and not the outer boundary? > Sincerely, > Fereshte Ramezani > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com> wrote:
> > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> sure, mris_volume will give you the interior volume ofany closed surface
> using the divergence formula. Note that this is *not* thevolume of the
> ribbon but rather the volume of the entire interior > > cheers > Bruce > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > Hello FreeSurfer developersIs it possible to have thevolume of pial surface
in > FreeSurfer? > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > The information in this e-mail is intended only for theperson to whom it is
> addressed. If you believe this e-mail was sent to you inerror and the e-mail
> contains patient information, please contact the PartnersCompliance HelpLine at
> http://www.partners.org/complianceline . If the e-mailwas sent to you in error
> but does not contain patient information, please contactthe sender and properly
> dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person towhom it is
addressed. If you believe this e-mail was sent to you in errorand the e-mail
contains patient information, please contact the PartnersCompliance HelpLine at
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but does not contain patient information, please contact thesender and properly
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sorry, can you clarify what your question is?
On Sat, 16 Sep 2017, Fereshte wrote:
Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something? Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte fereshte.ramezani@gmail.com wrote: Hi Bruce, Thank you for your replies. Cheers
On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Fereshte
the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS papers cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > What's the algorithm used to expand inner cortical boundary ( to achieve the outer cortical boundary > in pial surface) in FreeSurfer? > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > it will give the interior volume of whatever surface you give it as a > command line argument. > > On Mon, 4 Sep 2017, Fereshte > wrote: > > > Using the Pial surface; Does it mean mris_volume will give the inner cortical boundary > of the > > surface and not the outer boundary? > > Sincerely, > > Fereshte Ramezani > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com> wrote: > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > > sure, mris_volume will give you the interior volume of any closed surface > > using the divergence formula. Note that this is *not* the volume of the > > ribbon but rather the volume of the entire interior > > > > cheers > > Bruce > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > Hello FreeSurfer developersIs it possible to have the volume of pial surface > in > > FreeSurfer? > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it is > > addressed. If you believe this e-mail was sent to you in error and the e-mail > > contains patient information, please contact the Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you in error > > but does not contain patient information, please contact the sender and properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Well i did ask if it was possible to obtain the volume of Pial surface and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior"
I can't see mris_volume in FreeSurfer commands.
On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sorry, can you clarify what your question is?
On Sat, 16 Sep 2017, Fereshte wrote:
Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i use
mri_vol2surf or something?
Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte fereshte.ramezani@gmail.com
wrote:
Hi Bruce,Thank you for your replies. Cheers
On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
Hi Fereshte the algorithm is documented in the recon1 1999 NeuroImage and 2000PNAS
papers cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > What's the algorithm used to expand inner cortical boundary ( toachieve the
outer cortical boundary > in pial surface) in FreeSurfer? > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> it will give the interior volume of whatever surface yougive it as a
> command line argument. > > On Mon, 4 Sep 2017, Fereshte > wrote: > > > Using the Pial surface; Does it mean mris_volume willgive the inner
cortical boundary > of the > > surface and not the outer boundary? > > Sincerely, > > Fereshte Ramezani > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com>
wrote: > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > > sure, mris_volume will give you the interiorvolume of any closed
surface > > using the divergence formula. Note that this is*not* the volume
of the > > ribbon but rather the volume of the entire interior > > > > cheers > > Bruce > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > Hello FreeSurfer developersIs it possible tohave the volume of
pial surface > in > > FreeSurfer? > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > > > The information in this e-mail is intended onlyfor the person to
whom it is > > addressed. If you believe this e-mail was sent toyou in error and
the e-mail > > contains patient information, please contact thePartners
Compliance HelpLine at > > http://www.partners.org/complianceline . If thee-mail was sent to
you in error > > but does not contain patient information, pleasecontact the
sender and properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > The information in this e-mail is intended only for theperson to whom it
is > addressed. If you believe this e-mail was sent to you inerror and the
e-mail > contains patient information, please contact the PartnersCompliance
HelpLine at > http://www.partners.org/complianceline . If the e-mailwas sent to you in
error > but does not contain patient information, please contactthe sender and
properly > dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person towhom it is
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Is it not in $FREESURFER_HOME/bin ? What version are you using?
On 9/16/17 12:05 PM, Fereshte wrote:
Well i did ask if it was possible to obtain the volume of Pial surface and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior"
I can't see mris_volume in FreeSurfer commands.
On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:
sorry, can you clarify what your question is? On Sat, 16 Sep 2017, Fereshte wrote: > Dear FreeSurfer developers > I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something? > Looking forward to hearing from you! > On Tue, Sep 5, 2017 at 9:46 AM Fereshte <fereshte.ramezani@gmail.com <mailto:fereshte.ramezani@gmail.com>> wrote: > Hi Bruce, > Thank you for your replies. > Cheers > > On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > Hi Fereshte > > the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS > papers > > cheers > Bruce > On Mon, 4 Sep 2017, Fereshte wrote: > > > What's the algorithm used to expand inner cortical boundary ( to achieve the > outer cortical boundary > > in pial surface) in FreeSurfer? > > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > > it will give the interior volume of whatever surface you give it as a > > command line argument. > > > > On Mon, 4 Sep 2017, Fereshte > > wrote: > > > > > Using the Pial surface; Does it mean mris_volume will give the inner > cortical boundary > > of the > > > surface and not the outer boundary? > > > Sincerely, > > > Fereshte Ramezani > > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com <mailto:fereshte.ramezani@gmail.com>> > wrote: > > > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl > <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > > > sure, mris_volume will give you the interior volume of any closed > surface > > > using the divergence formula. Note that this is *not* the volume > of the > > > ribbon but rather the volume of the entire interior > > > > > > cheers > > > Bruce > > > > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > > > Hello FreeSurfer developersIs it possible to have the volume of > pial surface > > in > > > FreeSurfer? > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the person to > whom it is > > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > > contains patient information, please contact the Partners > Compliance HelpLine at > > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > > but does not contain patient information, please contact the > sender and properly > > > dispose of the e-mail. > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it > is > > addressed. If you believe this e-mail was sent to you in error and the > e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > > but does not contain patient information, please contact the sender and > properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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I changed the FreeSurfer version to 6 and now i could find it. Thank you! Cheers
On Sat, Sep 16, 2017 at 9:21 PM Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Is it not in $FREESURFER_HOME/bin ? What version are you using?
On 9/16/17 12:05 PM, Fereshte wrote:
Well i did ask if it was possible to obtain the volume of Pial surface and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior"
I can't see mris_volume in FreeSurfer commands.
On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sorry, can you clarify what your question is?
On Sat, 16 Sep 2017, Fereshte wrote:
Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i use
mri_vol2surf or something?
Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte fereshte.ramezani@gmail.com
wrote:
Hi Bruce,Thank you for your replies. Cheers
On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
Hi Fereshte the algorithm is documented in the recon1 1999 NeuroImage and2000 PNAS
papers cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > What's the algorithm used to expand inner cortical boundary (to achieve the
outer cortical boundary > in pial surface) in FreeSurfer? > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> it will give the interior volume of whatever surface yougive it as a
> command line argument. > > On Mon, 4 Sep 2017, Fereshte > wrote: > > > Using the Pial surface; Does it mean mris_volume willgive the inner
cortical boundary > of the > > surface and not the outer boundary? > > Sincerely, > > Fereshte Ramezani > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com>
wrote: > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > > sure, mris_volume will give you the interiorvolume of any closed
surface > > using the divergence formula. Note that this is*not* the volume
of the > > ribbon but rather the volume of the entireinterior
> > > > cheers > > Bruce > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > Hello FreeSurfer developersIs it possible tohave the volume of
pial surface > in > > FreeSurfer? > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Bruce Fischl -
Douglas Greve -
Fereshte