The file passed to --reg should be a registration file. This is a text file with the transformation matrix and a few other things, not a volume file.
On 10/8/18 5:28 PM, Frehiwot Woldeyes wrote:
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Hello Freesurfers,
I was attempting to reconstruct a monkey brain, i encountered an error during talairach registration step, i have used tkregister2 to manually edit the registration but i have gotten error there too:
tkregister2 --targ /usr/local/freesurfer/subjects/monkey/mri/orig/A04_crop.mhd.nii --mov /usr/local/freesurfer/subjects/monkey/mri/orig/A04_crop.mhd.nii --reg /usr/local/freesurfer/subjects/A004_crop.mhd.nii tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /usr/local/freesurfer/subjects/monkey/mri/orig/A04_crop.mhd.nii movable volume /usr/local/freesurfer/subjects/monkey/mri/orig/A04_crop.mhd.nii reg file /usr/local/freesurfer/subjects/A004_crop.mhd.nii LoadVol 1 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 regio_read_register(): No such file or directory Could not open /usr/local/freesurfer/subjects/A004_crop.mhd.nii ERROR: reading /usr/local/freesurfer/subjects/A004_crop.mhd.nii
Do you have any thoughts on how to troubleshoot this one?
Regards, frehiwot
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