Hello all
Below is my information:
rhinal
cat $FREESURFER_HOME/build-stamp.txt
source /usr/local/freesurfer/nmr-dev-env setenv SUBJECTS_DIR /space/rhinal/2/users/gopal/lynch_data
which recon-all
cd /space/rhinal/2/users/gopal/lynch_data
I am not having an error per se, but recon-all keeps crashing before it is complete. If i look at the files that were created in order of date modified, the last file created in the surf folder (before it crashed) is rh_defect labels. files such as rh.sphere and rh.thickness were not created (although the corresponding lh files were). Do I have to run the entire recon-all program again? Or can I just run recon-all -s lynch -autorecon3? I am just trying to figure out if there is a quicker way to create the remaining files other than running the entire recon-all process, which will take another 30 hrs.
I appreciate any suggestions.
Thanks very much Abi