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Fra: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] På vegne av Taylor Hilton Sendt: 8. februar 2017 15:45 Til: Freesurfer support list Emne: Re: [Freesurfer] recon-all issue {Disarmed}
Apologies, that was an old log, attaching the relevant one here.
On Feb 7, 2017, at 6:02 PM, Douglas Greve <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
According to the log file, the error is that you need a new license: GNU libc version: 2.23 ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: MailScanner has detected a possible fraud attempt from "na01.safelinks.protection.outlook.com" claiming to be http://surfer.nmr.mgh.harvard.edu/registration.htmlhttps://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html&data=01%7C01%7CBTH22%40pitt.edu%7Cc8e46b2994ca49debee208d44fad662b%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=w5Q7lX%2BASSB7qijJrUUV3axar1i0RN1fLXFf5izm%2F44%3D&reserved=0
On 2/7/17 12:49 PM, Taylor Hilton wrote: Yes I’ll attach it here. I’m using a linux server(Ubuntu).
On Feb 7, 2017, at 12:32 PM, Douglas Greve <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
Can you send the full recon-all.log? What platform are you running on?
On 2/7/17 11:19 AM, Taylor Hilton wrote: Hi all,
Having trouble with an error running "recon-all -subjid ${i} -autorecon2†across all subjects.
Below is where it has the error in recon-all.log. We also tried running the last command (“ln -s …â€) manually and got the error “ln: failed to create symbolic link ‘lh.white.H’: Operation not supported.†whereas the rest of the commands ran normally.
#-------------------------------------------- #@# Curv .H and .K lh Tue Feb 7 07:29:43 EST 2017 /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf
mris_curvature -w lh.white.preaparc
total integrated curvature = 18.936*4pi (237.960) --> -18 handles ICI = 230.2, FI = 1697.2, variation=29040.790 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 10007 exited with ERRORS at Tue Feb 7 07:29:46 EST 2017
To report a problem, see MailScanner has detected a possible fraud attempt from "na01.safelinks.protection.outlook.com" claiming to be http://surfer.nmr.mgh.harvard.edu/fswiki/BugReportinghttps://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=4E2gE66k%2B747OnpEjef%2Baz5Z3DQx7Ht6qpqJVFxWom8%3D&reserved=0
————————————————————————————————————————————————
We also tried the solution laid out in this thread with no luck: MailScanner has detected a possible fraud attempt from "na01.safelinks.protection.outlook.com" claiming to be https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-September/040473...https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=zqIKnda0hwYWkR7BguoviwK2l8Vy3aJzjBXabpTb1Zc%3D&reserved=0
Any help is very appreciated!
- B. Taylor Hilton Lab Data Coordinator, University of Pittsburgh
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