Dear Doug
Thanks for the clarification. I was using files in the standard fsaverage surface space.
Thanks again! Raka
________________________________ From: Douglas N Greve greve@nmr.mgh.harvard.edu To: raka maitra rakamaitra@yahoo.com Cc: freesurfer_mailing_list freesurfer@nmr.mgh.harvard.edu Sent: Mon, August 9, 2010 4:02:11 PM Subject: Re: [Freesurfer] smoothed data stats
It should work. How are you smoothing the thickness file? You need to smooth it in the native surface space.
doug
raka maitra wrote:
Dear all
I would like to look at the change in the average values of thickness after smoothing. But mris_anatomical_stats does not work on the smoothed files as the no of vertices of the annot files and the smoothed files are very different.
I tried recreating annot files using the flag -surf pial and the aparc+aseg.mgz but I got following error message: could not open translation file /Applications/freesurfer/cma_parcellation_colors.txt could not open translation file /Applications/freesurfer/Simple_surface_labels2002.txt
Your help would be appreciated. Thanks in advance Raka
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