Hello Jinsong,
I could be wrong, but after examining the recon-all.log file you attached, I believe your case exposed a minor bug in the program when using the -parallel flag. However, due to the specifics of this case, I think all future subjects should work. And I using just the autorecon3 flag on this case might work as well.
Can you please try reprocessing the subject using just the -autorecon3 flag and let me know how is goes?
recon-all -s p0001 -autorecon3
On 06/27/2017 01:41 PM, Jinsong Tang wrote:
Dear FreeSurferexperts,
When I run the FreeSurfer 6.0. the recon-all exited with ERRORS. Attached is the log file. Can you please let me know how fix this error?
Thanks,
Jinsong
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