Hi Rauf,
Can you try adding '-careg' to recon-all command line - "recon-all -autorecon2 -subjid $SUBJECTNAME -careg"?
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of ANWAR Rauf Sent: Wednesday, December 14, 2022 9:43 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] ERROR: cannot find or read transforms/talairach.m3z
External Email - Use Caution Hi
I am creating the source model using the tutorial of Fieldtrip. The part of activity involves using freesurfer, I get the error after running the command
recon-all -autorecon2 -subjid $SUBJECTNAME
And the error is given as
reading transform from transforms/talairach.m3z ERROR: cannot find or read transforms/talairach.m3z error: No such file or directory error: transforms/talairach.m3z: could not open transform
I have looked online and mostly people get this error, when they limited RAM, however I have roughly 13 Gb of RAM at my disposal. Any help in this regard will be greatly appreciated.
Thanks Rauf