Yes I did. I was on the last step, the testing freesurfer when I discovered the commands do not work
On Thu, Jan 14, 2016 at 2:14 PM, dgw dgwakeman@gmail.com wrote:
Jasmin,
Did you follow the instructions from the wiki:
https://surfer.nmr.mgh.harvard.edu/fswiki/QuickInstall which links to this mac specific page. https://surfer.nmr.mgh.harvard.edu/fswiki/MacOsInstall
?
hth d
On Thu, Jan 14, 2016 at 5:10 PM, Jasmin Alves jalves@usc.edu wrote:
Jasmins-MacBook-Pro:freesurfer jasminalves$ ls -l $FREESURFER_HOME/bin/tksurfer
-rwxr-xr-x 1 root wheel 103 May 14 2013 /Applications/freesurfer/bin/tksurfer
Jasmins-MacBook-Pro:freesurfer jasminalves$ $> freeview -v $SUBJECTS_DIR/bert/mri/brainmask.mgz -v $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red
-bash: freeview: Permission denied
On Thu, Jan 14, 2016 at 2:04 PM, Douglas N Greve <
greve@nmr.mgh.harvard.edu>
wrote:
Jasmin, can you just cut and paste it into the email?
On 01/14/2016 04:59 PM, Jasmin Alves wrote:
Here is the output to the ls command
On Thu, Jan 14, 2016 at 1:55 PM, Jasmin Alves <jalves@usc.edu mailto:jalves@usc.edu> wrote:
Hi Dr. Greve, I am still receiving the same message that I am denied access to freeview. Is there anything I can do? Thanks, Jasmin On Thu, Jan 14, 2016 at 1:22 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>wrote:
Hi Jasmin, do you have permission to execute FS commands? What is the result of ls -l $FREESURFER_HOME/bin/tksurfer On 01/14/2016 04:16 PM, Jasmin Alves wrote: > Hello, > > I recently downloaded freesurfer on my mac with a Yosemite operating > system. The application itself appears to work, however I am not able > to use the command line to do any of the testing free surfer commands, > as I keep getting a access denied. I have attached a screenshot. Your > help would be very useful. > > Thank you, > Jasmin > > -- > Jasmin Alves > Predoctoral Student > Medical Biology Graduate Program > University of Southern California > jalves@usc.edu <mailto:jalves@usc.edu> <mailto:jalves@usc.edu <mailto:jalves@usc.edu>> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing:ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jalves@usc.edu <mailto:jalves@usc.edu>-- Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jalves@usc.edu mailto:jalves@usc.edu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jalves@usc.edu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you
in
error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer