External Email - Use Caution
The best solution (which I think was previously emailed to you) is to have an admin/IT person update your system by doing the following:
1) Copy the link for the freesurfer release install package matching your Ubuntu system, e.g., 7.3.2 freesurfer release on Ubuntu 18, 20, 22, from
https://secure-web.cisco.com/1yhwT1AT1siR71m0xkciflHcVEcWiQ2tB105s7o77YZsEO5...
2) Download and install it with,
$ wget <link copied from the web page above>
.... say wget downloaded the file freesurfer_ubuntu18-7.3.2_amd64.deb ....
$ sudo apt-get install ./freesurfer_ubuntu18-7.3.2_amd64.deb
That should install libncurses and anything else that's needed automatically. Trying to piecemeal run commands to install individual system packages like libncurses is asking for more trouble.
- R. On 2/22/23 10:54, Iglesias Gonzalez, Juan E. (JIGLESIASGONZALEZ@mgh.harvard.edu) wrote:
Thanks for the interest in our software! Could you please try running this command from the terminal? sudo apt-get install libncurses5 Cheers, /Eugenio
-- Juan Eugenio Iglesias
http://secure-web.cisco.com/1KWPEVNu98oFkAEfRE8iBX30sj9pfVOIOS35SyW9UbpZ5sFZ...
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of behçet ayyıldız <behcetayyildizz@gmail.com>
Reply-To: Freesurfer support list <Freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, February 15, 2023 at 05:36
To: "Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmenThalamicNuclei.sh exited with ERRORS
External Email - Use Caution
Dear All, I was using Linux Ubuntu to perform my analysis. However, they were changed with Linux ..... a couple of days ago. And while the segmentThalamicNuclei.sh command was running before the change, after the change it didn't run and I got the following message. drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ segmentThalamicNuclei.sh con_HaJa93 Setting ITK threads to 1 #-------------------------------------------- #@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is ..:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1.1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7..1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64: /sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory 127 Linux
causal.brain.mri.tu-muenchen.de 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux Do you guys have any idea how to fix it ? Thanks in advance.