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Dear All, Thank you very much for your interest. I contacted my system administrator and he fixed it.

fsbuild fsbuild@contbay.com, 22 Şub 2023 Çar, 18:04 tarihinde şunu yazdı:

The best solution (which I think was previously emailed to you) is to have an admin/IT person update your system by doing the following:

1. Copy the link for the freesurfer release install package matching your

Ubuntu system, e.g., 7.3.2 freesurfer release on Ubuntu 18, 20, 22, from https://secure-web.cisco.com/17odrIaeqqXyCFNMITUZLWCsV1nDLwcZvIwAdFfrCgZstaX...

2. Download and install it with,

$ wget <link copied from the web page above> .... say wget downloaded the file freesurfer_ubuntu18-7.3.2_amd64.deb .... $ sudo apt-get install ./freesurfer_ubuntu18-7.3.2_amd64.deb

That should install libncurses and anything else that's needed automatically. Trying to piecemeal run commands to install individual system packages like libncurses is asking for more trouble.

• R.

On 2/22/23 10:54, Iglesias Gonzalez, Juan E. ( JIGLESIASGONZALEZ@mgh.harvard.edu) wrote:

Thanks for the interest in our software!

Could you please try running this command from the terminal?

sudo apt-get install libncurses5

Cheers,

/Eugenio

--

Juan Eugenio Iglesias

http://secure-web.cisco.com/1CD4UMye_OW85IfsE6bQBrNtvpWyCJy2BhTyu2MIEBR_-FzT...

*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of behçet ayyıldız behcetayyildizz@gmail.com *Reply-To: *Freesurfer support list Freesurfer@nmr.mgh.harvard.edu *Date: *Wednesday, February 15, 2023 at 05:36 *To: *"Freesurfer@nmr.mgh.harvard.edu" Freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] segmenThalamicNuclei.sh exited with ERRORS

•    External Email - Use Caution        *
  
  

Dear All,

I was using Linux Ubuntu to perform my analysis. However, they were changed with Linux ..... a couple of days ago. And while the segmentThalamicNuclei.sh command was running before the change, after the change it didn't run and I got the following message.

drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ segmentThalamicNuclei.sh con_HaJa93

Setting ITK threads to 1

#--------------------------------------------

#@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET

---

Setting up environment variables

---

LD_LIBRARY_PATH is ..:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1.1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7..1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64:

/sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory

127

Linux causal.brain.mri.tu-muenchen.de http://secure-web.cisco.com/1Q7u7_P_NBkc_6lPG6bKTBeKKKlGXijIY3WOh-az_lej5ouUAxdtd4EmKT_u9Ta4ud8eMwDHlMpBMhNFLQGw8LWF4sEDJlyH6Muh82TsilCRK1ngCD8sjyG-bAu8CT6GY9MyisYmh9yQuNzToAjWnufnO_vOtzf99VuFt0fshgezuEzCh7ol77iCiTtL-r6g3DBhNXWLP_G9X0qe-imQVFcZecK19skmK2_yLx7sH-K6ro7bRrWRzE3teegonbBQVv6CgdfZbtEQB51-157E3hXTYNBhNfuMoLwk1ExcuA4yRb2ATsBgCSvv-JLWOJuv_03h2XiPIQvfiWSc1jUKDtA/http%3A%2F%2Fcausal.brain.mri.tu-muenchen.de 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux

Do you guys have any idea how to fix it ?

Thanks in advance.

--

*Behçet Ayyıldız..*

---

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