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في الأربعاء، 2 مارس 2022 في 2:52 ص تمت كتابة ما يلي بواسطة Fischl, Bruce <BFISCHL@mgh.harvard.edu>:
Can you send the file instead of a screen shot?
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *REEM ABU BAKR BAHATHIQ *Sent:* Tuesday, March 1, 2022 6:04 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] check recon-all errors
External Email - Use Caution *Thank you for your quick reply, here I attached the recon-all.log file and showed the end of it in the picture>
Could you please explain to me how to find out the error and re-complete the processing from it? So that I can apply it to other unfinished subjects
في الأربعاء، 2 مارس 2022 في 1:31 ص تمت كتابة ما يلي بواسطة Fischl, Bruce <BFISCHL@mgh.harvard.edu>:
The file recon-all.log in the scripts dir for each subject should have any error messages. Usually we start looking at the end of them to see what happened.
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *REEM ABU BAKR BAHATHIQ *Sent:* Tuesday, March 1, 2022 5:10 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] check recon-all errors
External Email - Use Caution *Hello Freesurfer experts
I ran the full Recon-all pipeline on my 400 .scans data. I wanted to get the "wmparc.mgz" image of each subject. But I couldn't find it in some of them !!
Where can I find the error file for the subject, as I think the process is not completed here?
I would also like to inquire about the way to restart Recon-all from where the pre-processing stopped. How can I determine which step stopped processing and what should I write from a command in Linux to complete the processing process?
The attached picture shows the processing output for the subject that I think something went wrong with it
Thanks in advance
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