Hi Nicholas
yes, possibly, depending on why you are missing chunks. If the white matter in the regions you are missing has intensity values significantly < 110 then what you are doing should help. The control.dat file must be place in the subject/tmp dir for us to find it.
cheers Bruce On Wed, 27 Sep 2017, Nicholas Goh wrote:
I am attempting to fix the aparc+aseg.mgz file for an image, and wanted to check to see if I am doing it correctly.What I was doing which seemed to be ineffective was 1)create a new point set of control points labelled control.dat 2)place control points along what should be white matter 3)save point set 4)run recon-all -autorecon2-cp -autorecon3 -subjid XXXX
Is this the correct way to go about fixing aparc+aseg files that are missing chunks of the brain? Is there a better way to go about this? Thanks for the help,
Nicholas Goh