Hi Daniel,
sorry, the tutorial is out of date, and we're hoping to update it. The easiest way to do a recon is the recon-all script that Doug Greve wrote. Run it without any command line arguments to see the syntax. You can then view the results using view volume and view surface from csurf, or invoke tkmedit (volume) and tksurfer (surface) from the command line directly.
cheers, Bruce
-------------------------------------------------------- Bruce Fischl email: fischl@nmr.mgh.harvard.edu Mass. General Hosp. NMR Center. tel:(617)-726-4897 Rm. 2301, Building 149, 13th Street fax:(617)-726-7422 Charlestown, MA 02129 USA
On Fri, 27 Aug 2004, Daniel Schwartz wrote:
I'm just starting to learn FreeSurfer, and am trying to go through bert's data step by step. When I click "Read Header" in the Setup Structural Scan Parameters, after selecting "COR-.info", it returns "-unset-" in the file type field. When I try this with another data set (mine) it does the same thing. Are the formats the problem? Is this something that I've done wrong? Thankyou for ANY help you can give me...
-Daniel
Daniel Schwartz, CIC Functional Brain Imaging Lab Oregon Health & Sciences University 3181 SW Sam Jackson Pk. Rd. Portland, OR 97239 (503) 494-6494
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