[Freesurfer] How to edit orig surface?

deepa preeti

2 Apr 2007 2 Apr '07

9:30 a.m.

Hi,

I am trying to do cortical segmentation. But unfortunately during autorecon2 stage, in some of the scans the orig surface did not include some of the wm, even though these regions are included in wm.mgz and so, the pial surface failed to include them as well.

How to edit in this case? ( because this region is already there in wm.mgz).

I have attached the brainmask & wm.mgz.

Any suggestions greatly appreciated.

Thanks, Preeti Ramasamy.

Attachments:

attachment.html (text/html — 497 bytes)
74501_brainmask.png (image/png — 26.0 KB)
74501_wm.png (image/png — 13.8 KB)

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