Thanks Douglas. My command lines are
'mri_surfcluster --in /Volumes/My_Book_Thunderbolt_Duo/subjects_DCNTDC/qdec/Untitled/rh-Diff-WT-Hetero-Intercept-thickness/sig.mgh --thmin <FDR-determined threshold> --subject fsaverage --hemi rh --ocn ocn.mgh'
'mri_segstats --i /Volumes/My_Book_Thunderbolt_Duo/subjects_DCNTDC/qdec/Untitled/y.mgh --seg ocn.mgh --excludeid 0 --avgwf y.ocn.dat --sum ocn.sum'
I referred previous archives. Are there anything wrong?
Best Regards, Hiroki
On Wed, 18 Jan 2017 15:20:39 -0500, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
what are your command lines?
On 01/18/2017 01:39 AM, hiroki.sato@med.tohoku.ac.jp wrote:
Dear experts,
I have some questions. I did Qdec group analysis with three nuisance factors. And one region remained after FDR correction. Then I did 'mri_surfcluster' specifying the FDR-determined voxel-wise threshold as the --thmin. After that I ran 'mri_segstats' and got the values.
1)Are these values 'nuisance factors adjusted' values?
2)If not, is there a way to get 'nuisance factors adjusted' values
using
FreeSurfer?
Best Regards, Hiroki
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