Thanks Martin. Should I be worried about affine transform masking out the global atrophy if I am using the whole brain (no skull stripping)?
Arman
On Wed, Apr 12, 2017 at 9:36 PM, Martin Reuter mreuter@nmr.mgh.harvard.edu wrote:
Hi Arman,
should be possible by passing the - - affine flag. I think I also experimented around with a -base-affine flag to recon-all for that (instead of -base). It is experimental!
Best, Martin
On 07 Apr 2017, at 13:34, Arman Eshaghi arman.eshaghi@gmail.com wrote:
Hi,
I wonder if there is a way for mri_robust_template to perform iterative
registration with 9 DOF rather than 6-7 default. The rational is to allow for a bit of scaling to adjust for potential scanner drifts in a longitudinal study over years.
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