Absolutely, here it is attached. Thank you for looking into this.
Best,
Jen
On Thu, Mar 3, 2016 at 12:24 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Can you send me rh_time_spval.mgh?
On 03/01/2016 04:42 PM, Jennifer Legault wrote:
Hi Doug,
Thank you for responding. I actually realized what was the matter (I had specified the path for fsaverage which led to the error; this is no longer an issue so long as I use "--subject fsaverage" instead of "--subject /path/fsaverage."
Here is the command I've been running for mri_surfcluster:
mri_surfcluster --subject fsaverage --hemi rh --in /path/rh_time_spval.mgh --csd
/usr/global/freesurfer/5.3.0/freesurfer/average/mult-comp-cor/fsaverage/rh/cortex/fwhm01/pos/th40/mc-z.csd
--cwpvalthresh 0.0001 --fdr .05 --no-fixmni --annot aparc --sign pos --o /path/rh_time_cluster_cwp0001.mgh --cwsig /path/rh_time_cluster_mni_cwp0001.mgh --sum /path/rh_time_cluster_mni_sum
I do consistently have an issue though where the final output seems to be inaccurate (even with CWP of p<.0001 and FDR correction, I receive over 800 significant clusters). I am assuming this is a problem with the LME multivariate analysis script, although I am not exactly sure which part of the script needs to be changed. Attached is a screenshot of the output (visualized with freeview), as well as the matlab script and the qdec file (with fsid, fsid-base, MRI (time), group, and eTIV as columns). This script is geared towards examining changes in the brain after cognitive training lasting 2-3 weeks. If you have the time to look over this and let me know of any recommendations you have, it would be greatly appreciated.
Best,
Jennifer Legault
On Tue, Mar 1, 2016 at 3:27 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
can you send your command line and terminal output?
On 02/25/2016 01:52 PM, Jennifer Legault wrote:
Hi Douglas,
Thank you for all your help. When I say "volume" I do mean the FS thickness*area measure. I ran the mri_glmfit with --osgm and for the FWHM received the value of .925737. Assuming that this rounds up to 1, I then went to $FREESURFER_HOME/average/mult-comp-cor/fsaverage to find the CSD file and I selected the fwhm01 csd file.
I then ran the mri_surfcluster command, however, I got the following error:
ERROR: you have specified srcsubjid=fsaverage on cmdline, but CSD file was created with fsaverage
Any suggestions you have would be appreciated.
Best,
Jen
On Thu, Feb 11, 2016 at 1:32 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
by "volume" do you mean a VBM-type analysis or do you mean thevolume
that comes out of FS (thickness*area)? If you are going to use a clusterwise correction, then you have to have a FWHM measurement.You
can try analyzing it in mri_glmfit with --osgm just to get the FWHM out of it. You should be able to output a .mgh file instead of a .w file On 02/11/2016 01:07 PM, Jennifer Legault wrote: > That's very useful, thank you. In terms of FWHM, I am examining gray > matter volume, not cortical thickness, and was previouslyinstructed
> by Martin Reuter not to smooth these data. Do you think it would make > sense then to just use the fwhm01? And in terms of thevoxel-wise
> threshold, is there a commonly used value for GM volume data?I am
> still new to freesurfer and I appreciate any feedback. > > For visualization, after I run the mri_surfcluster the onlyoutputs
> are a summary file and a .w file, and freeview doesn't acceptthis
> format. Is it possible to have a cluster-wise corrected map (a > sig.cluster.mgh file) as they do for the Clusterwise Correctionfor
> Multiple Comparisons tutorial here > <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis%3E?
> > > Best, > > Jen > > On Thu, Feb 11, 2016 at 11:39 AM, Douglas N Greve > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> wrote: > > > > On 02/11/2016 11:19 AM, Jennifer Legault wrote: > > Thank you for your response. Do I need to run theglm_fit-sim
> command > > to make the csd file? I feel this would be inappropriate for my > data > > since I already ran the LME model. > No, look in $FREESURFER_HOME/average/mult-comp-cor/fsaverage. You will > need the FWHM though > > > > Second, is there an argument to make an output file that can be > > visualized via freeview? In other words, how can I view my cluster > > thresholded data? > You can use freeview, something like > freeview -f lh.inflated:overlay=sig.mgh > There are other options for loading annotations and curvature. See the > freeview help > > > > Your help is greatly appreciated, > > > > Jen > > > > > > > > On Wed, Feb 10, 2016 at 11:04 PM, Douglas Greve > > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>> wrote: > > > > There is a (very long) command line on that page.Mainly you
> need > > a csd file. To get that you need the FWHM of your analysis, the > > voxel-wise threshold, and the sign of the contrast (or abs). > Then > > the relevant output will be the --sum. You can run itwith
> --help > > to get more info. > > > > > > On 2/10/16 5:11 PM, Jennifer Legault wrote: > >> Thank you very much for your help! I still received a "cannot > >> read file type" error when I only added the path to the output > >> --o part, however when I also added the path to the input file, > >> it worked! > >> > >> I do have one more question: Which argument can Iadd so
> that in > >> my output file I see the clusterwise P value, like it is shown > >> here > >> > <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysisClusterSum...
?
> >> > >> Best, > >> > >> Jen > >> > >> On Wed, Feb 10, 2016 at 1:50 PM, Douglas N Greve > >> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>> wrote: > >> > >> I meant for the output files, so the --o in particular > >> > >> On 02/10/2016 01:47 PM, Jennifer Legault wrote: > >> > Douglas, > >> > > >> > Thank you for your quick response. When I add--sd
> >> [path_location], I > >> > get the following error: > >> > Loading source values > >> > mri_read(): couldn't determine type of file > >> [path_location]/rh_time_spval > >> > ERROR: could not read rh_time_spval as type > >> > > >> > Should I use another argument? > >> > > >> > Best, > >> > > >> > Jen > >> > > >> > > >> > > >> > On Wed, Feb 10, 2016 at 1:41 PM, Douglas NGreve
> >> > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> > >> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> > >> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> > >> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote: > >> > > >> > Try specifying the full path to the output > >> > > >> > On 02/10/2016 12:59 PM, Jennifer Legaultwrote:
> >> > > Dear experts, > >> > > > >> > > I am trying to use the cluster thresholding command > >> for my > >> > freesurfer > >> > > LME outputs as referred to here > >> > > > >> > > >> > <https://surfer.nmr.mgh.harvard.edu/fswiki/LinearMixedEffectsModels%3E.
> >> > > Any feedback or comments would be greatly > appreciated. > >> > > > >> > > I am aware that there have been permission denied > >> errors when using > >> > > mri_surfcluster and that applying thispatch
> >> > > > >> > > >> > <ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/mni152reg
> >> > > should solve the problem (which I tried), however I > >> am still either > >> > > receiving errors stating the permission is denied. > >> > > > >> > > This is the command I am trying to run: > >> > > > >> > > mri_surfcluster --subject fsaverage --hemi rh --in > >> > rh_time_spval.mgh > >> > > --cwpvalthresh 0.05 --fdr .05 --sign pos--o
> >> rh_time_cluster --sum > >> > > rh_time_cluster_sum > >> > > > >> > > > >> > > Here is the error log: > >> > > > >> > > mri_surfcluster --subject fsaverage --hemi rh --in > >> rh_time_spval.mgh > >> > > --cwpvalthresh 0.05 --fdr .05 --sign pos--o
> >> rh_time_cluster --sum > >> > > rh_time_cluster_sum thsign = pos, id = 1 > >> > > version $Id: mri_surfcluster.c,v 1.51.2.3 > 2012/05/31 > >> 22:10:05 > >> > greve Exp $ > >> > > hemi = rh > >> > > srcid = rh_time_spval.mgh > >> > > srcsubjid = fsaverage > >> > > srcsurf = white > >> > > srcframe = 0 > >> > > thsign = pos > >> > > thmin = -1 > >> > > thmax = -1 > >> > > fdr = 0.05 > >> > > minarea = 0 > >> > > xfmfile = talairach.xfm > >> > > nth = -1 > >> > > outid = rh_time_cluster paint > >> > > sumfile = rh_time_cluster_sum > >> > > subjectsdir = /gpfs/home/jtl190/work/structurals > >> > > FixMNI = 1 > >> > > ------------- XFM matrix (RAS2RAS) --------------- > >> > > > >> > > >> >/gpfs/home/jtl190/work/structurals/fsaverage/mri/transforms/talairach.xfm
> >> > > 1.000 0.000 0.000 0.000; > >> > > 0.000 1.000 0.000 0.000; > >> > > 0.000 0.000 1.000 0.000; > >> > > 0.000 0.000 0.000 1.000; > >> > > > ---------------------------------------------------- > >> > > Reading source surface > >> > > > >>/gpfs/home/jtl190/work/structurals/fsaverage/surf/rh.white
> >> > > Done reading source surface > >> > > Computing metric properties > >> > > Loading source values > >> > > number of voxels in search space = 163842 > >> > > Done loading source values (nvtxs =
> >> > > overall max = 1 at vertex 27 > >> > > overall min = 1.52021e-05 at vertex125620
> >> > > surface nvertices 163842 > >> > > surface area 65020.929688 > >> > > surface area 65020.765625 > >> > > Setting voxel-wise threshold with FDR = 0.050000 > >> > > Assuming input map is -log10(p) > >> > > MRISfdr2vwth(): np = 163842, nv = 163842, fdr = > 0.05, > >> vwth=1.04576 > >> > > FDR Voxel-wise threshold is 1.04576 > >> > > Adjusting threshold for 1-tailed test. > >> > > If the input is not a -log10(p) volume, re-run with > >> --no-adjust. > >> > > Searching for Clusters ... > >> > > thmin=1.045757 (0.744727), thmax=-1.000000 (-1), > >> thsignid=1, > >> > > minarea=0.000000 > >> > > Found 9803 clusters > >> > > Max cluster size 5993.586426 > >> > > INFO: fixing MNI talairach coordinates > >> > > Saving thresholded output torh_time_cluster
> >> > > Can't create file > >> > > > >> > > >> >/gpfs/home/jtl190/work/structurals/fsaverage/surf/rh.rh_time_cluster.w
> >> > > > >> > > Permission denied > >> > > > >> > > > >> > > > >> > > > >> > > Thank you for taking the time to read this email. > >> > > > >> > > Sincerely, > >> > > > >> > > Jennifer Legault > >> > > > >> > > -- > >> > > Jennifer Legault > >> > > Ph.D candidate, Neuroscience > >> > > Brain, Language, and Computation Lab > >> > > The Pennsylvania State University > >> > > > >> > > > >> > > _______________________________________________ > >> > > Freesurfer mailing list > >> > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>>> > >> > > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >> > > >> > -- > >> > Douglas N. Greve, Ph.D. > >> > MGH-NMR Center > >> > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> > >> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>> > >> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> > >> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>> > >> > Phone Number: 617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>> > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>> > >> <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358 <tel:617-724-2358> > <tel:617-724-2358 <tel:617-724-2358>>>> > >> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 <tel:617-726-7422>> > <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422 <tel:617-726-7422>>> <tel:617-726-7422 > <tel:617-726-7422> > >> <tel:617-726-7422 <tel:617-726-7422>>> > >> > > >> > Bugs: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > >> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > >> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > >> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
> >> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
> >> > > >> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
> >> > Outgoing: > >> > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>>> > >> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > > >> > > >> > The information in this e-mail is intendedonly
> for the > >> person to > >> > whom it is > >> > addressed. If you believe this e-mail was sent to you > >> in error and > >> > the e-mail > >> > contains patient information, please contact the > Partners > >> > Compliance HelpLine at > >> > http://www.partners.org/complianceline . Ifthe
> e-mail was > >> sent to > >> > you in error > >> > but does not contain patient information, please > >> contact the > >> > sender and properly > >> > dispose of the e-mail. > >> > > >> > > >> > > >> > > >> > -- > >> > Jennifer Legault > >> > Ph.D candidate, Neuroscience > >> > Brain, Language, and Computation Lab > >> > The Pennsylvania State University > >> > > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>
> >> Phone Number: 617-724-2358 <tel:617-724-2358> > <tel:617-724-2358 <tel:617-724-2358>> > >> Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > <tel:617-726-7422>> > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > >> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2
> >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
> >> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
> >> Outgoing: > >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >> > >> > >> > >> > >> -- > >> Jennifer Legault > >> Ph.D candidate, Neuroscience > >> Brain, Language, and Computation Lab > >> The Pennsylvania State University > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > > > The information in this e-mail is intended only forthe
> person to > > whom it is > > addressed. If you believe this e-mail was sent to youin
> error and > > the e-mail > > contains patient information, please contact thePartners
> > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mailwas
sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > -- > > Jennifer Legault > > Ph.D candidate, Neuroscience > > Brain, Language, and Computation Lab > > The Pennsylvania State University > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
> Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html%3E
> Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > -- > Jennifer Legault > Ph.D candidate, Neuroscience > Brain, Language, and Computation Lab > The Pennsylvania State University > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Jennifer Legault Ph.D candidate, Neuroscience Brain, Language, and Computation Lab The Pennsylvania State University
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer