Dear Freesurfers,
I am now encountering a new error with the Hinds V1 procedure:
I am still using the same version (5.1.0) and nothing has changed, except that I have been doing some cross-hemispheric registration for some of the subjects (not this one).
using inflated surface for initial alignment using n_averages = 4096 l_dist = 10.000 using l_parea = 1.000 $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from /Applications/freesurfer/subjects/t05/surf/lh.sphere... reading template parameterization from /Applications/freesurfer/subjects/V1_average/label/lh.v1.invivo.tif... mrisReadTriangleFile(/Applications/freesurfer/subjects/t05/surf/lh.smoothwm): surface doesn't match /Applications/freesurfer/subjects/t05/surf/lh.sphere
Any suggestions?
All the best, Anders
2012/6/13 Anders Hougaard ahougaard@dadlnet.dk
Hi Bruce,
That actually seems to do the trick. Thank you very much!
Best, Anders
2012/6/12 Bruce Fischl fischl@nmr.mgh.harvard.edu
try symlinking the ?h.white surfaces to the ?h.smoothwm and see if that solves your problem
cheers Bruce
On Tue, 12 Jun 2012, Anders Hougaard wrote:
Dear Dr. Bock,
I get the same error in FS 5.1.0 when running recon-all -s <subject> -label_v1.
Did you find a solution?
Best regards,
Anders Hougaard, MD Danish Headache Center Dept. of Neurology Glostrup Hospital Copenhagen Denmark
2011/11/11 Andrew Bock abock@u.washington.edu Hello,
I am having a similar problem to one described on the freesurfer mail archive, where I receive the following error when trying to identify V1 using the Hinds method (i.e. recon-all -s <subject> -label_v1): processing subject V1_average... MRISreadVertexPosition(white): could not open file /usr/local/freesurfer/**subjects/V1_average/surf/rh.**white No such file or directory MRISreadOriginalProperties: could not read surface file white No such file or directory could not read surface positions from white No such file or directory As Prof. Krish Singh indicated in July, it appears the problem occurs when trying to open rh.white (or lh.white) from the surf subdirectory in V1_average, which doesn't exist. I have run recon-all -s <subject> -make all, but it returns "make: Nothing to be done for `all'." Any help you can provide would be greatly appreciated! Thanks in advance, Andrew -- Andrew Bock, Ph.D. Department of Psychology University of Washington Seattle, WA 98195 Tel: 206.543.3817 Fax: 206.685.3157 abock@u.washington.edu______________________________**_________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurferhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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