in some regions like left amygdata, the difference exceed 5%
2010-02-02
Chunhui Chen _________________
Institute of Cognitive Neuroscience and Learning Beijing Normal University Beijing, China 100875
发件人： Bruce Fischl 发送时间： 2010-01-22 12:38:11 收件人： chenchunhuichina 抄送： 主题： Re: Re: [Freesurfer] Orientation of 001.mgz versus raw dicom data no, that shouldn't matter On Fri, 22 Jan 2010, chenchunhuichina wrote:
May I ask a related question?
My structural data are acquired in sagital view, do I have to re-orient it before I run recon-all? In fslview, it's X axis is acturally from anterior to posterior.
Thanks!
2010-01-22
chenchunhuichina
发件人： Bruce Fischl 发送时间： 2010-01-22 07:06:58 收件人： yzhangd@artsci.wustl.edu 抄送： freesurfer@nmr.mgh.harvard.edu 主题： Re: [Freesurfer] Orientation of 001.mgz versus raw dicom data
How do you know? It should be in the same space. Bruce
On Jan 21, 2010, at 5:01 PM, yzhangd@artsci.wustl.edu wrote:
I have run the following command to create a 001.mgz file from raw *.dcm data:
recon-all -s <subjid > -i <path to *.dcm data >
The output 001.mgz file is not in the same native space as the original *.dcm data. Could anyone tell me what space the 001.mgz file is in? Does the above command change the orientation (i.e does it rotate/ translate) besides simply converting from .dcm to 001.mgz
thanks a lot
yuning
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