Dear FreeSurfer Experts,
I was trying to run freesurfer on one of my MPRAGEs that was acquired on 7T scanner with isotropic resolution of 0.5mm. I have got two different errors below. Could you please suggest something for me?
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#@# Talairach Failure Detection Tue Sep 9 16:02:41 BST 2008 /data_local/ali/freesurfer/subjects/MPRAGE/MS_PC/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0090, pval=0.0000 < threshold=0.0050) Linux morgana 2.6.11.4-21.11-smp #1 SMP Thu Feb 2 20:54:26 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Tue Oct 10 16:12:41 BST 2008
*************************WATERSHED************************** Sorting... first estimation of the COG coord: x=208 y=168 z=180 r=51 first estimation of the main basin volume: 562273 voxels mean intensity too low ! Modification of the image: intensity*0.50 first estimation of the COG coord: x=208 y=168 z=179 r=51 first estimation of the main basin volume: 559292 voxels mean intensity too low ! Modification of the image: intensity*3.72 first estimation of the COG coord: x=208 y=168 z=180 r=51 first estimation of the main basin volume: 569632 voxels mri_watershed Error: Interpolation problem in the white matter curve analysis
Linux morgana 2.6.11.4-21.11-smp #1 SMP Thu Feb 2 20:54:26 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Tue Oct 14 18:44:05 BST 2008
Many thanks in advance Ali
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