External Email - Use Caution
Sorry for the confusion. The Va doesn’t let us access our gmails so I’ll send an email with the text from my city mail email address.
On Friday, January 25, 2019, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Amrita
please don't take an image of the text and send us that. Just copy and paste the text directly into the email. This is *much* more useful for us.
cheers Bruce
On Fri, 25 Jan 2019, Amrita Bedi wrote:
External Email - Use Caution[0a440090-c896-4f22-8bd2-fe98f24c8013] On Friday, January 25, 2019, Amrita Bedi amibedi273@gmail.com wrote: [IMAGE] Here you go. On Friday, January 25, 2019, Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> wrote: Hi Amrita, can you just paste the text into the email? thanks doug
On 1/25/19 10:51 AM, Amrita Bedi wrote: External Email - Use Caution Hi Dr Greve,Ran mris_fwhm and got the attached.
On Thursday, January 24, 2019, Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> wrote: Based on the output below, it looks like there are problems with running one of the freesurfer binaries. Can you run mris_fwhm ? Just type the command and return and see what happens.
/home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm --mask /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_recon/Bold1/fc.lpccseed.surf.lh/mask.nii.gz --i /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_rec on/Bold1/fc.lpccseed.surf.lh/rho1mn.nii.gz --o /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_rec on/Bold1/fc.lpccseed.surf.lh/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /share/VA_Imaging/Projects/salat/2389_TRT/abedi /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm: /home/apps/matlab/MATLAB/R2011b/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm)
On 1/23/19 10:11 AM, Amrita Bedi wrote: > > External Email - Use Caution > > Hi Dr Greve, > > Attached is the log file. > > On Tuesday, January 22, 2019, Greve, Douglas N.,Ph.D. > <DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>> wrote: > > Can you send the full terminal output and/or the log file? > > On 1/22/19 2:53 PM, Amrita Bedi wrote: > > > > External Email - Use Caution > > > > Hello Freesurfer developers, > > > > I was following the functional connectivity walkthrough forresting > > stage BOLD data and I got the attached error when I ran step 8 > > (selxavg3-sess). Does anyone have any thoughts on how to trouble > shoot > > this? > > Not sure if it’s of any use but I ran this using Freesurfer 6.0 on > > Centos 7.4 > > > > Thank You. > > > > Best > > Amrita > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > mailto:Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.e du/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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