8 Feb
2012
8 Feb
'12
3 a.m.
Hi
Thanks.
Python was the first programing languages that I learned along with Java.
Cheers Knut Jørgen
On 08. feb. 2012 06:42, Michael Waskom wrote:
Hi,
On the off chance that you are comfortable with Python, you may find that PySurfer http://pysurfer.github.com/ provides a more pleasant scripting environment than the tcl-based TkSurfer interface :)
Best, Michael
On Tue, Feb 7, 2012 at 12:46 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Hi Knut, you can check out my script called tksnap (uses accopanying mytks.tcl). It will take pics in different orientations. Note: this is not a supported script, so it's up to you to figure out what it does and how it does it. I provide it as a way to help you figure this stuff out. If you don't know csh and tcl, then it's not going to be much use to you. Good luck! doug ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tksnap ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mytks.tcl Knut J Bjuland wrote: > Hi Bruce > > > Is it possible to use ascript to create a similar figure to the jpg > file I am attaching? > > Knut J > > > > On 07. feb. 2012 15:09, Bruce Fischl wrote: >> Hi Knut >> >> you can use a tcl script in tksurfer if you want. You are probably >> better off doing the 10^-log(p) on your own and saving it as a >> separate overlay. There are plenty of tcl scripts in the distribution >> as examples. A simple one would be: >> >> set val $home/$subject/label/$hemi.your_overlay.mgz >> puts "loading overlay $val" >> sclv_read_binary_values sclv_current_field >> redraw >> save_tiff $odir/$hemi.your_overlay.lateral.tif >> rotate_brain_y 180 >> redraw >> save_tiff $odir/$hemi.your_overlay.medial.tif >> >> >> put that in a file named something.tcl then load tksurfer with -tcl >> something.tcl >> >> I don't know about the 500dpi though, sorry. >> >> cheers >> Bruce >> >> >> >> On Tue, 7 Feb 2012, Knut J Bjuland wrote: >> >>> I have used Tksurfer to make image from cross subject statistics >>> maps in >>> mgh files. Is it possible to use a script to make image with both >>> hemisphere in lateral and medial view. I would also like to display p >>> values as 10^-log(p). Is this possible? Can I use Matlat or FDR? How >>> can >>> I produce image with 500 dpi in tksurfer? >>> >>> Knut J >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer